Piph003205.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730178.1:6482139-6499800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0043 0.41 12.2 4.4 1 23 245 267 245 267 0.98 2 12 0.11 11 7.8 3.7 1 23 275 298 275 298 0.92 3 12 0.33 32 6.3 0.7 1 23 302 325 302 325 0.93 4 12 0.00029 0.028 15.9 2.5 1 23 401 423 401 423 0.99 5 12 0.3 29 6.4 2.7 1 23 431 454 431 454 0.96 6 12 0.26 25 6.6 0.7 1 23 458 480 458 480 0.96 7 12 7.8e-05 0.0074 17.7 1.9 1 23 485 508 485 508 0.97 8 12 0.024 2.3 9.9 1.5 1 23 512 535 512 535 0.94 9 12 0.71 68 5.2 0.1 3 20 553 570 551 572 0.93 10 12 2.4e-06 0.00023 22.4 2.6 1 23 650 672 650 672 0.98 11 12 0.00034 0.032 15.7 0.6 1 23 678 700 678 700 0.96 12 12 0.00078 0.074 14.5 3.9 1 23 706 729 706 729 0.97
Sequence Information
- Coding Sequence
- ATGCACGATATACAGGCTTGTATAGCTTGTCTTAGAACCGATGTTAAAATCTTTCACATGAGCTCAAATCATATTCGAGAAGACTATAACTTGGTTTCTGGATTAAAGACTTGTAGTGGGGAAGGACTACCAGAATATGTGTGTGTGGAATGTTTGGCACTTGTTAAAGGCATGAAGAGGTTCAGAGACAAATGCCATAGATCTCATTTCCTTTTACATGAAATACTTAAAAAGAATAAACAGATAACTTTGCAAGTACTAAATGAAATTAACCTACAAACCTTAAATATAACCCCAAAGCTATCTTACCTCAATAATAGCAGTAGAAATAagtatgaaaaaataaaatttaagtggAAGAAAGAGAACCGATCCTATGTGCAGCCTATCCAAGCTAATGTGTTACTGCATAGTACAGTTGACAATGAAATAAATCCATACATAGAAGTGGAAGTCCCAGAATGTAATTTGCCACCAGTTTTTAACATAGAAGATGAAAACATTAACAATGAAATTAATGTTTCTGTAGAAACCGATAcaaaaaataatgaagattatgATTATGTTGATCATGTTGATAATGAAATAGAAGATGATATCGAGATAGAAAAAGAGGAGAATGATGTAGATGGATCTAATTTAGACGTAGAATATGCCGTTTTGGTTCCCATGTCCAAGAATGAAGCTGCGGCCGTTatagatatttttaaaacatacggacagacaggaAAACATGAGTGCGACATATGTGGGTTAAAGTTTCACAATAAGAATAGACTGGACCAACATAGACGGATGCATGATACGCATATAAACGGTAATTTTAGCTGTGATCTGTgccattattattataagactaAATTTTTACTGGACACCCACATCACCGACAAACATATGTACAAATATATTTGTAGAAAATGCCCAGAAGTTACTTATAATAGAAAAACAGCCAAGCAACATTACATACTCAGTCACATGGATAAAGCAGACAAAACGTTCGAGGACTGGTACGATACGAGACCCTCTTGGTTAAAGAAGAGAAGTCTCAATGGCAAAAGACAAAAGAAGACGAATAAACATAAGAAGAATGTCTTTACCCGTGAAGGCTTCGAGTTTTTAAAGTATTCTCCGATAACACACAACGAGCAATACAGTCTTGTGTTGGAGAGAAAGAATTCGAAAAACTATGTAGAATCTATGTATAAATGTGAGTTGTGTTACAAAGGTTTCCGTGAGGAGAAGACGTATGAGAAACACATGCAGAAACATGACCCGagTATATCGGGCAAGTACCAGTGTGACTCGTGCAAGATATACTGCGCTAACCCCCGCAAGATGTACAAACACATGATACAGACGCATCTGTACAGATTCACGTGCACGCTCTGCACTTTTGTTACGACCAATCGGCCCCAAGCAAAACTTCACTATCTCTGGCATAAGGACGTAACATACGCCTGTCCTCACTGCGACAaagtttttaaGAAAATGTCCACCCAACTCACCCACATCCGTATAAAACATCCATCCCTGTTCATCTGTAATCTGTGCGGACACAGTTTCGTCAGCGAAGCCGGTCTGATATGCCACAAGAGGATAACGCATCAAGACGAGGGAAAAGAGGAGGACGACATGAAGACTGACGCGGCGCTATTCTGTGCATTGTGCAACCTGCAGTTCAAAGACGAGGTCGCGTATACCACGCACCTGGGCAGCTCCGGCAACCACGCCGAGAGCAACCTGTCCGTATCGAAGACTATGGCGAGTAAGAACAAGAAGGTCCGCGCGGCGAGGAACCGTCGCACGCGCCGACAATTCCCCGAAGTGCTTAACAACGGCATCGTCACAGAGACCAACTGCGAGATTtgcgACAAGCTGCTGCTGAGTGACGTGCAGGCTCGCCGGCACTACGAGACCGACCACCCCGGCGCCGAGTTCCGGAAGCGGTTCATGTGCGACATCTGCGGACACACCACACGGCAATACTCGAACCTTCTGACGCACATGCGCACGCACACGCACGAGAAGCCGTTCGCGTGCCCGCATTGCGAGCGCCGCTTCAGCATGCCCAGCAACCGAGACAGGCACATAGTGGTCCACACGGGCGAGAAACCGCACGAGTGCCCGCACTGCTTCCGTCGATTCTCGCAACGGACCGCCATGAAATTACACGTCCAGACCGTACATTTAAAAATACCGTACGCACCCTGGAATAAGAACAACAGGAGACGCCGACAGAAGGACGAAACCGAGACGGCAAGTACGATTCTTACCACCATGATGCCGGCGAAATTGCCGACAATCACCAAAATACCGATTGTGAACGAGACGCATGATTACCTCAACGCGTATATCACTTATAACGAGTGA
- Protein Sequence
- MHDIQACIACLRTDVKIFHMSSNHIREDYNLVSGLKTCSGEGLPEYVCVECLALVKGMKRFRDKCHRSHFLLHEILKKNKQITLQVLNEINLQTLNITPKLSYLNNSSRNKYEKIKFKWKKENRSYVQPIQANVLLHSTVDNEINPYIEVEVPECNLPPVFNIEDENINNEINVSVETDTKNNEDYDYVDHVDNEIEDDIEIEKEENDVDGSNLDVEYAVLVPMSKNEAAAVIDIFKTYGQTGKHECDICGLKFHNKNRLDQHRRMHDTHINGNFSCDLCHYYYKTKFLLDTHITDKHMYKYICRKCPEVTYNRKTAKQHYILSHMDKADKTFEDWYDTRPSWLKKRSLNGKRQKKTNKHKKNVFTREGFEFLKYSPITHNEQYSLVLERKNSKNYVESMYKCELCYKGFREEKTYEKHMQKHDPSISGKYQCDSCKIYCANPRKMYKHMIQTHLYRFTCTLCTFVTTNRPQAKLHYLWHKDVTYACPHCDKVFKKMSTQLTHIRIKHPSLFICNLCGHSFVSEAGLICHKRITHQDEGKEEDDMKTDAALFCALCNLQFKDEVAYTTHLGSSGNHAESNLSVSKTMASKNKKVRAARNRRTRRQFPEVLNNGIVTETNCEICDKLLLSDVQARRHYETDHPGAEFRKRFMCDICGHTTRQYSNLLTHMRTHTHEKPFACPHCERRFSMPSNRDRHIVVHTGEKPHECPHCFRRFSQRTAMKLHVQTVHLKIPYAPWNKNNRRRRQKDETETASTILTTMMPAKLPTITKIPIVNETHDYLNAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406299;
- 90% Identity
- iTF_00934209;
- 80% Identity
- -