Piph011851.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- ZFX
- Assembly
- GCA_963422495.1
- Location
- OY730181.1:20508457-20511538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.5e-05 0.0052 18.2 1.2 1 23 250 272 250 272 0.98 2 14 0.97 92 4.8 0.4 6 23 284 301 284 301 0.96 3 14 0.25 24 6.7 1.9 1 23 310 333 310 333 0.90 4 14 7.5e-05 0.0072 17.7 4.1 2 23 353 374 353 374 0.98 5 14 0.0001 0.0096 17.3 0.7 1 23 380 403 380 403 0.96 6 14 0.046 4.3 9.0 0.1 1 23 409 431 409 431 0.94 7 14 0.00077 0.073 14.6 0.1 1 23 437 459 437 459 0.94 8 14 1.8 1.7e+02 4.0 1.0 1 23 580 602 580 602 0.91 9 14 1.1e-05 0.001 20.4 2.4 2 23 609 631 608 631 0.92 10 14 4e-05 0.0038 18.6 1.7 1 23 637 659 637 659 0.96 11 14 2.2e-06 0.0002 22.6 0.1 1 23 665 687 665 687 0.97 12 14 0.0015 0.14 13.7 0.1 1 23 693 715 693 715 0.98 13 14 0.012 1.2 10.8 1.7 1 23 721 743 721 743 0.95 14 14 0.2 19 6.9 6.0 1 23 749 772 749 772 0.92
Sequence Information
- Coding Sequence
- ATGAATATTGAAAGTGAAAAAATGCTTGTTGTAAATTCCAATGCAAATTTGACGCAAGATAGCCAAAGTTTCGCGGAAACGTGCAATGTGTTGAACGGTctggaaaatctgtcaaatgtCTGCCGAACATGTGCAAATGTAACAGAGTTTGTTATACCCATATTCATCGGTGAGGGTCTACACAAtaacttggcacaaaaaattcAGCAACATCTTCCAATAAAGATATCAGAGGATGATGTTCTGCCGCACGTGGTGTGCTACCAGTGTGCCAGCACGATCCTCGCCTGGCATGACCTCGTGGAGTGTTGCCTCCAGGCTGACGTGACACTGCAGCAGCGAATATCTTCACTTACTAATGAAACAGAGctgaaaaaaaattcaaaccaaaGATTAGAGGATAATGAAGAAAGTTCTGCCAAAAAAGGGGAGGATAAACTTTTAGGCCTAGTGTATGACATTCTTCGTGAGTACCTACAACTTATGGAATTAGATGAAAATAATACTATGGATTTAGATTATGTGTGCCAGGTCTGCGCACACAAACCTGCAGCTAAAACGATAGACAACTTGGTGAAACACCTCCGGTTGTCTCATAGCACGAAACTCTGCAACTCGGAGTCTATTCGGAACTTCATCAGGAACAATATAACTTTTGAAGAATCTTTAAGCATGAAAGACCTAGACGACCGTGGGAGTGATACAGACAAAGAAATCAATAAAGAAGCCGGGACCGACTTGCCGGCATACTTCTGCCCCTACTGCGACAGCGCCTTCTCCACCCCCACTAGGCTGATACATCACATCAACAGACACATAGATATATCGAAGGAGAGAGTGCTAACATGCTGCGGGGAAAGCTTCGACAAAAAATCCTTTGCGCTCCACCTGCAGCGCAAGCACGTGGCGCGCGTCGTCACGGGCCCGCACGTGTGCCGGAGCTGCTCCCACAGTGCTCGCACCCAGCACGACCTGCAGGCGCACGTGGCCGCCGAGCACCGCGCGCAGCCCGCCGCCCGCCCCGAGCAGCGCCGTCGCCGCTCGCACGCGCCCGCCACCTGCCCCCGGTGCCGCAAGACGTTCTCCAATAAACACAACATGCTGGTGCATCTGAGGTCGCACGACGCGAGCGAGCCGTTCGCGTGCGACAGATGCGACAGGCGCTACAGGACCCGGAGCGGCCTGAGCGAGCACCGCCGCATCGTCCACGAGGGCGTGATGCGGCACGTGTGCGCGACGTGCGGCGAGGCTTTCCCCACGCGCGGCgcgcgcgacgtgcacgcccgCCTGCACTCCGGCGTGCGCCCCTTCGCCTGCGACTACTGCGGCAAGGCCTACCGCGCCAAGAACACGCTGGACCGCCACGTCGAGGCGCACCTGGACGTCCGGAAATGCGCGCCCCGCCCCGGCTCCGAGCCGGCGCCGAGCGAGGCGGCCGGGGAGCTTGCCGAtcgcgacgacgacgacgacgagcCCCCGGCGAGCGGGGCGGGGAGGAGGGCCGCCGAGTTGTACGGAAACTTCTACGGCGCCCTCGTAAATTTTCGGGACCATCTCGCCACCGAGCACGAGGGGAGCTCCCCGGACTCCGGCGACTCCGATGGGGGCGGGAGCGACGAGGCGGTCGGCGACGAGTACGACGACCTCACCCGGGGCGGCGCGAGGAGGGCGGGGGGGAGCGCCGAGACCGAGCTCGAGCTCGCCCGCGCGCTGACGAGGGTCGACGGGCGGGCATACTACGCGTGCGGCACGTGCGGCAAGCACCTCGGCTCGGCGCAGACCTACCTGTTCCACCGGCGCATCCACACGGACGAGCGGCCGTGCGTGTGCCACGTCTGCGGCAAGCGGTTCCGCACGCCCAACGGCCTGCGCCGCCACCTCGCCGAGACCCACGAGCGCCGCCGGCTCCACGCCTGCGCGCTGTGCCACAGGACCTTCGCCAACTCCCAGAACCTCCGGGCGCACGCGCGCATCCACACCGGCGAGAAGCCGTTCGTGTGCGCGCAGTGCGGGAAGCGCTTCACGCAGAGCGGCTCCCTGAACGCGCACGCGCGCGGCCACAGCGCGCTGCACCCGTACCGCTGCGCCGAGTGCGGGGCGCAGTTCAAGCTGCGCGCCGGCCTCGCGCGCCACGCGCTGCGGCACACGGGCGAGCGGCCGCACGCCTGCGACGCGTGCGCGCGCGCCTTCCGCCACCGCCACGAGCTCGCCGCGCACGCGCTCACGCACACCGACGCCCGCCCGCATGCCTGTCGCCTCTGCGGCTCCGCCTTCCGCCAGCGCAAGGCGCTGCGCCACCACTGCAGGCGCGTCCACGAGACCGACGCCGCCGACGCGCCCGGGCTCGTCTACGACCACGTCGGCCCGTACGAGTGA
- Protein Sequence
- MNIESEKMLVVNSNANLTQDSQSFAETCNVLNGLENLSNVCRTCANVTEFVIPIFIGEGLHNNLAQKIQQHLPIKISEDDVLPHVVCYQCASTILAWHDLVECCLQADVTLQQRISSLTNETELKKNSNQRLEDNEESSAKKGEDKLLGLVYDILREYLQLMELDENNTMDLDYVCQVCAHKPAAKTIDNLVKHLRLSHSTKLCNSESIRNFIRNNITFEESLSMKDLDDRGSDTDKEINKEAGTDLPAYFCPYCDSAFSTPTRLIHHINRHIDISKERVLTCCGESFDKKSFALHLQRKHVARVVTGPHVCRSCSHSARTQHDLQAHVAAEHRAQPAARPEQRRRRSHAPATCPRCRKTFSNKHNMLVHLRSHDASEPFACDRCDRRYRTRSGLSEHRRIVHEGVMRHVCATCGEAFPTRGARDVHARLHSGVRPFACDYCGKAYRAKNTLDRHVEAHLDVRKCAPRPGSEPAPSEAAGELADRDDDDDEPPASGAGRRAAELYGNFYGALVNFRDHLATEHEGSSPDSGDSDGGGSDEAVGDEYDDLTRGGARRAGGSAETELELARALTRVDGRAYYACGTCGKHLGSAQTYLFHRRIHTDERPCVCHVCGKRFRTPNGLRRHLAETHERRRLHACALCHRTFANSQNLRAHARIHTGEKPFVCAQCGKRFTQSGSLNAHARGHSALHPYRCAECGAQFKLRAGLARHALRHTGERPHACDACARAFRHRHELAAHALTHTDARPHACRLCGSAFRQRKALRHHCRRVHETDAADAPGLVYDHVGPYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -