Piph027527.2
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730188.1:8038380-8047539[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.22 21 6.8 1.1 1 19 239 257 239 262 0.86 2 26 0.17 16 7.2 4.0 2 21 288 307 287 310 0.94 3 26 0.0011 0.11 14.0 1.4 1 23 332 354 332 354 0.98 4 26 0.023 2.2 9.9 1.5 1 23 358 380 358 380 0.85 5 26 0.27 25 6.6 0.6 1 23 384 407 384 407 0.93 6 26 0.44 42 5.9 2.2 2 23 414 436 413 436 0.93 7 26 0.37 35 6.1 0.9 2 19 444 461 443 466 0.87 8 26 0.0017 0.16 13.5 5.4 1 23 472 494 472 494 0.97 9 26 3.9e-05 0.0037 18.6 4.8 1 23 500 522 500 522 0.97 10 26 0.25 24 6.7 0.2 1 17 528 544 528 545 0.93 11 26 0.0015 0.14 13.6 1.5 1 23 592 614 592 614 0.96 12 26 0.99 94 4.8 0.2 2 23 643 665 642 665 0.90 13 26 0.01 0.96 11.0 0.4 2 23 686 708 685 708 0.94 14 26 0.0011 0.1 14.1 2.0 2 23 714 736 713 736 0.95 15 26 0.0017 0.16 13.5 0.9 1 23 741 764 741 764 0.92 16 26 0.03 2.8 9.6 0.2 2 23 767 789 766 789 0.94 17 26 0.0089 0.85 11.2 1.3 2 22 796 816 795 816 0.95 18 26 0.0084 0.8 11.3 0.5 1 23 875 898 875 898 0.93 19 26 0.65 62 5.4 0.2 3 23 927 948 925 948 0.94 20 26 0.13 13 7.5 0.1 3 23 972 994 970 994 0.94 21 26 0.0048 0.45 12.1 0.5 3 20 1001 1018 999 1022 0.90 22 26 0.024 2.3 9.9 0.4 1 23 1027 1050 1027 1050 0.97 23 26 0.0045 0.43 12.1 0.9 2 23 1056 1078 1056 1078 0.94 24 26 6e-05 0.0057 18.0 3.8 1 23 1082 1105 1082 1105 0.97 25 26 0.00026 0.024 16.1 0.7 2 23 1112 1133 1111 1133 0.96 26 26 0.0052 0.49 12.0 2.4 1 23 1139 1161 1139 1161 0.97
Sequence Information
- Coding Sequence
- ATGGAATTTCAAGAAACCGTAGTCAAAGACAGCCCTGGCTTATGCCGGTGTTGTCTCTCCGAAGGTTGTTACAAGGAGTTGGGCGCAGAGTACACTTGGTTTAATGAGACTGAAATATATGCCGATATGCTATTGGATTGCTTTGATATAAGTATTTCGCAGCATGTGGAAGGTCCTAATGGTCCAAATAGGCTAATATGTGAAGTTTGCATTACGAGATTACGGGATGCATGTGAATTTAAGAAGCAAGTGCTAGAGTCAGAGAAAAAGTTTATCAACATGGTTTGCAAAGGGGAATTCAGTAAAACAGtgctagtgTACAAGGACCCTGTAAAAGTAGAAGTTAAAGACACTGACAACTTGGATGCAGAATATCTTGATGAAGATTTGGACCTTGATAATGATGATTTACCCGAAAAAATAGAAATAGAGACTCCACGTCCTGATAATTCTGATTTGACTGCATCAGTATCGGCAGTAAAAAAGAAAAGAGGAAGACCAAAGAAGACTGTAACTGAAGAAGAAAAACCCACACCGAAAAAAGCTAAAGTTGAAGATAAACCAAGGACATCTAAAGGTGTGAAATCCCGAGACACACCCAAAGTCACAAATTCTTTTATGACAACAACACACCGCAACCGACTCATGAAGCGAAACGCTGTCACTATCATAGAGTCGTCAACTGTGTTCCCCTTCAAATGGCATCGTCACGACTACCTATGTTTTTACTGCCACAAACCATTCAAGGAACTGGAAGTTTTGAGGGAACATTCTGGAAACGAGCATAAGAAAGCGAACGTTGAATCCGCCGTTTCGTATCTAAAGAGAGACGAGAAAGTCAAAATTGATATATCCGAATGTGTTTGTAAACTGTGCGATAAAGCTTTAGATAATTTAGACTCGCTCGTCCATCATCTCAGATGTAATCATGATAAAAATTTTGAAGACGCATGCGGATACGGGGTCGTGCCCTACAAACTTTTCAGTAACGAATATCAATGTGCAGTTTGCTCTAAGACGTTTCAGTATTTCATCAAACTGAACCAGCACATGAACGAGCATTTCGGCCTCTATGTTTGCGAGCACTGCGGCAAGTCCTTCCTCACTCAGGACCGCCTGAGGTTCCACGCCCTCTCTCACGGCTCCAACTTCAAATGTGCCTCGTGTTCGGAGACCTTCGAGACGCTCGCTCAAAGAACTAGCCACGAGATGCAGCAGCACAACAGAAGAAAGCTGATCCAGTGCCTCCACTGTTCCGAGACGTTCAAAAACTATTTGCTGAGGAAACTGCACTACAATTCCGTTCACAACGTTAAATTGGCGGTCATAAGCTGTCCAGTGTGCAGCAAACCTTTTCATGTAGCGAGCAAAATGTGGGCGCACTGCAAGGAGGTGCACGTTAGGGAGAGAAATTTTTCGTGTACCATGTGCGAAAAGAAGTTCTTCACCAGGACGCACGTCCAAAAGCACATGGTGAAACATTTGGGGGAGAGAACACATCATTGCGAGATCTGCAAAAAGTCGTACGCCAGGAAACAGACGTTGCGCGACCATATGCGTATACACAACGGCGATAGACGCTACGCTTGTACGCAGTGCAGTCAAGCGTTCGTGCAAAACACGAGCCTCAAGTTGCTTATGAAATTCGGAAATTTCGTTTCAGATTTTAAAACGCAGAAAAATAAAGGCGAATGTTCGTCGATGCGTAGACGAAAAAATCTACAGTTACTATTCAATAACACCACGGTAATACCGTTTAAATGGCGCGGTAGGTACCTATGCTTCTATTGCAGCAGAGGTAGCTCAGACTACACGGAACTACGTAAACACATTAAAACCCACGGCCCCTGCTCCACCAAAGACCATTCCCTAAAAGTTTTGAAGGGTGGAAAAAATATGGAAATCAAAATCGATGTATCCGATATTACATGTGAGATTTGCAACGAACAGTTCGCAATATTAGATAAAATAATAGAACATCTGTGTAATGAGCATAACATGAAATACGATAAGGACGTCGACATGCCGATCGAGCAGTACAGACTCGTAGACTTGAGCTGCTTAACGTGCAACGAGAAATTCACGTACTTTGCGTACCTCGTGTCGCACATGAACGCTAACCATCCAAAAATATGCCTCGTGTGCGATAAATGCGAGCAGAAGTTCAATAAGAGGAGAGATTTGTTCTCGCACATGAAGAATTACCACCGAGAGGGAGGGTACGAGTGCGAGATTTGCTCCCAAAGCTTCACGTCGTTGAATGTGCTGAGGAAACACAAGGATAACCGCCATTTGACGACTTGCAGCATATGCGGCTTGAAACTACCCTCGGCCTCGTTAAAACAAAAGCACATGGAATTGGAGCACCCCGACGATGGATGTCTCCAATGCGATGTATGCTACAAAGATTTCCATACGAAACAAGGACTGAAAATGCACCTGAGAAAGTGTAAAGGCGAGGACGTCGTATTCGATGTCGGCCTTAAGAAGGAGGACGGTGCTATGGATTCCGATATTTTCTACGAAGCGGCGAAGCGACCCAGCGTAAAACAGATCAGAGAAAACATCGTAATCGTCATAAACATGTCTACGGCGATACCGTTTAACTTTTACAAAAATAAGTTTAACTGCTTCTATTGCTCCAAAGACTTTCCCGACTCCGATCTTATGAGAGAACACACCGTCATGGAACATCCTTCCTGCGACACGAAGGCGAAGTGCATTCGAAAATGCCGCGAGTCAGTCGCTTGCGTCAAAATAGACATATCTTCTCTCGCTTGCAAGATATGTTTCGAGTCGATGAAAGATTTGGACACCTTACTCGATCACCTGACGATCAAACACCAGGCCAACTACGATAGATCCATCACGACTTGCCTGCAGCCCTACAGACTCATAAAGGACCACATGGCTTGCCCGAACTGTCCGAACGAGGTGTTCAGATTTTTCGGAACGCTGCTCAAACACATGAACAACGTGCACACGAACAACAACATAATATGCGTTTACTGCGGACAGACGTTTAGAAAGGACGAGAATCTGCGAGTTCACGTGTGGCGACATCACAGGGATGGCAGGTTCAAGTGTAACATCTGCGGCGCCGACTGCAACATACCGTCGAGACTATACATGCACATGGCGAAGGCCCACGGGGTGAAAGCCGCTAAATGCACCAAGTGTTCGGAGACATTCGCCACCCAGTATCTTCGCCAGAAACATCTCATCGAGGTGCACAATTCGGGCCACGAGTGCACGTACTGCGGCAAACTGTTCACCCGCAACTCCTTCATGAGGGACCACATAAGACGGACCCACTTAAAGGAGAAGAATGTGGAGTGCACCATATGCAATATGAAGTTTTTCAATAATATCCTCCTCAGGAGGCACATGGTGAAGCACAGCGGGGAGAAAAACTTCCACTGTGAAATGTGCGGGGAGAGGTTCTATTGGAGGAAGAGTCTTCGGAGCCACATGGCTAGACACGGGAAACACGACCAAGCGATATAA
- Protein Sequence
- MEFQETVVKDSPGLCRCCLSEGCYKELGAEYTWFNETEIYADMLLDCFDISISQHVEGPNGPNRLICEVCITRLRDACEFKKQVLESEKKFINMVCKGEFSKTVLVYKDPVKVEVKDTDNLDAEYLDEDLDLDNDDLPEKIEIETPRPDNSDLTASVSAVKKKRGRPKKTVTEEEKPTPKKAKVEDKPRTSKGVKSRDTPKVTNSFMTTTHRNRLMKRNAVTIIESSTVFPFKWHRHDYLCFYCHKPFKELEVLREHSGNEHKKANVESAVSYLKRDEKVKIDISECVCKLCDKALDNLDSLVHHLRCNHDKNFEDACGYGVVPYKLFSNEYQCAVCSKTFQYFIKLNQHMNEHFGLYVCEHCGKSFLTQDRLRFHALSHGSNFKCASCSETFETLAQRTSHEMQQHNRRKLIQCLHCSETFKNYLLRKLHYNSVHNVKLAVISCPVCSKPFHVASKMWAHCKEVHVRERNFSCTMCEKKFFTRTHVQKHMVKHLGERTHHCEICKKSYARKQTLRDHMRIHNGDRRYACTQCSQAFVQNTSLKLLMKFGNFVSDFKTQKNKGECSSMRRRKNLQLLFNNTTVIPFKWRGRYLCFYCSRGSSDYTELRKHIKTHGPCSTKDHSLKVLKGGKNMEIKIDVSDITCEICNEQFAILDKIIEHLCNEHNMKYDKDVDMPIEQYRLVDLSCLTCNEKFTYFAYLVSHMNANHPKICLVCDKCEQKFNKRRDLFSHMKNYHREGGYECEICSQSFTSLNVLRKHKDNRHLTTCSICGLKLPSASLKQKHMELEHPDDGCLQCDVCYKDFHTKQGLKMHLRKCKGEDVVFDVGLKKEDGAMDSDIFYEAAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTVMEHPSCDTKAKCIRKCRESVACVKIDISSLACKICFESMKDLDTLLDHLTIKHQANYDRSITTCLQPYRLIKDHMACPNCPNEVFRFFGTLLKHMNNVHTNNNIICVYCGQTFRKDENLRVHVWRHHRDGRFKCNICGADCNIPSRLYMHMAKAHGVKAAKCTKCSETFATQYLRQKHLIEVHNSGHECTYCGKLFTRNSFMRDHIRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFHCEMCGERFYWRKSLRSHMARHGKHDQAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -