Piph003969.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- ZNF296
- Assembly
- GCA_963422495.1
- Location
- OY730178.1:22170843-22190897[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0046 0.44 12.1 0.4 2 20 184 202 184 206 0.95 2 17 0.062 5.9 8.6 2.5 2 23 239 260 238 260 0.97 3 17 0.0059 0.56 11.8 0.2 2 23 333 355 332 355 0.90 4 17 0.0064 0.61 11.7 0.2 2 23 371 393 371 393 0.89 5 17 0.0064 0.61 11.7 0.2 2 23 680 702 680 702 0.89 6 17 0.065 6.2 8.5 0.8 4 23 713 734 708 734 0.84 7 17 0.0064 0.61 11.7 0.2 2 23 750 772 750 772 0.89 8 17 0.0053 0.5 11.9 0.3 2 23 788 810 788 810 0.89 9 17 0.071 6.7 8.4 0.2 3 20 817 834 816 836 0.90 10 17 0.00014 0.013 16.9 0.5 1 23 844 867 844 867 0.95 11 17 2.1e-05 0.002 19.5 0.1 2 23 885 906 884 906 0.95 12 17 5e-07 4.8e-05 24.6 2.0 1 23 912 935 912 935 0.97 13 17 2.2e-07 2.1e-05 25.7 0.8 3 23 947 967 946 967 0.98 14 17 4.6e-07 4.4e-05 24.7 1.1 1 23 973 995 973 995 0.99 15 17 4.8e-06 0.00046 21.5 1.7 2 23 1002 1023 1001 1023 0.96 16 17 4e-08 3.8e-06 28.0 0.6 1 23 1029 1051 1029 1051 0.99 17 17 0.028 2.7 9.6 0.3 1 23 1057 1079 1057 1079 0.97
Sequence Information
- Coding Sequence
- ATGGCCCTTACAAGTTTAggtataaaaattgaaaatatatgcaGAACATGTTTAACAAAAGAAGCAGAACTGCTCTCTGTGTTTAATACGTTCGTGGGAGCGTCCACTTTGGAGAACATCATAACATATGTAACAGGGATAGAGTTCGCAGAAGGCGATGGCTTGCCTACAACAGTTTGTAGTGAGTGCAAATCAAAAGCGGAGACAGCTTATGACTTCAAGTCAAGGTCACGGGAATCCGACATGGCATTACAGGGACTCATCAAGAAAGAGAAGTTGAATGACAATCATGATGTTGAGtCCGGTGTGAatgtgaaaattgaaaatatagcAGAAAATGCAGAGATGTACATGGATTTAGATTTTAACATCCCTCTCAGCAATAGCAATGATAACTTCGACGATGATGAAATAAAGAGCTTAGATGAACCACACACAACCTTACAACTAGATCATAAAGAATTAATAGAAAGTAGTGCTGCTAGTACAAGGTCAAAGAAGAAAATCGATACAGGCCAGAATATGTATGATACGGAACACAAAGTGGCGTACTGTCCTGTGTGTGACACCTCGTATGCCGACGTGGAGACACTAACCAAGCACATGTGGCATAAACACAGCGATATTATGGGGCCAAAGAAAAGGGGACGACCAAAGAAAGTTCAAACTAGCGCAATTTTAAAGAAACTATCAGAAAATGGTATGTCATTATCAACATGTGAATTCTGTAAGATGGATTATAAAACCAAAGAGAAGCTAGACTTACATATGCATATACATAAAGATACTTTACTTACAAACTGCCTAGTCTGTAAAAAAGTCTATCTATCCAAAGCGTACTATCAACAACATAAATGTCAGAGGAATCATATAGATAAATTGCAAAATGCAGAACCTCCGGATCCAAATATTTTACAAGACAGATCAGCACAGGTTTTGTTGGCTGAAATTGTAAAATCTAGTGATGCAGAGCATGAGGCCATAGAGTGTGTGAAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGAGTGTGGAGGTGTGTGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGTACATAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGTGCGTGCACAGCTACAAGGATAGACACACAGCTACAGTACATAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGTGCGTGCACAGCTACAAGGATAGACACACAGCTACAGTACATAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGTGCGTGCACAGCTACAAGGATAGACACACAGCTACAGTACATAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGTGCGTGCACAGCTACAAGGATAGACACACAGATACAGTACATAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGTGCGTGCACAGCTACAAGGATAGACACACAGCTACAGTACATAGAGTGTGGAGGTAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCCGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGAGTGTGGAGGTGTGCGAGGCGTGCGGGCGCGTGTGCCGCTCGCAGGCCGAGCTGCAGCAGCACCGCGACGCCGACCACCCCGAGCTGTCCGCCAGCTGCCAGCTGTGCGACAAGACATTTGCATCAGTGAAGACCGCAGAGCGTCACCGTGTGACGTGTGAGCGTGTCGAACGCAAATTCGTCTGTAATACATGCGGACGACGGTTCGCTTTCGAAATCTCTCTTAataagCACATATTGCAAAGTCACGCTGGTCAAAGAGTATCTGTGGACTTCATAAGCCGTCAGAAGCGACAGGTCACCTGTGACTTGTGTGGCAAGACCTTCCCTAGTAAGGAGCAGCTCGTTCGTCACAGCATCGTACATAAAACACCGAAAAAATACGAGTGTGATAAGTGCAAGAAGAAGTTCACTAGAAAAGGGAATTTAAAGTCTCACATACTCCGAGTACACGAGTCAGGTCTCAGCAGCAAAGGCAGCGGGCTGTGTCTGTACTGCGGCCGCAGTTTCAACAACTCGTCCAACCTCATAGTACACATGCGACGGCATACTGGCGAGAAACCGTACCAGTGTGATTTCTGTGGGAAAGGATTCCCTCGTTCGTCAGACCTTCAGTACCACAGACGCTCGCACACAGGGGAGAAACCGTGCAAATGCGGAATATGTGGAAAAGGTTTCACGGGCAGCAACAAGCTGTCGCGCCACATGCGCGTGCACACCGGCGCGCGGCCTTACAAGTGTCCGTACTGCGACAAGGCGTTCTCGCAGAGCAACGACCTCACCGTCCACGTGCGGCGACACACCGGCGACAAGCCATACGCGTGCGATGTATGCGGCGACCGCTTCATACAGGGTACAGCGCTCCACAACCACCGTCGTGCGCACGGGCACTACCCCGGCACGCAGCCTGTCACGTTCACCGTGCACACTGTCACGCAGACTCACTGA
- Protein Sequence
- MALTSLGIKIENICRTCLTKEAELLSVFNTFVGASTLENIITYVTGIEFAEGDGLPTTVCSECKSKAETAYDFKSRSRESDMALQGLIKKEKLNDNHDVESGVNVKIENIAENAEMYMDLDFNIPLSNSNDNFDDDEIKSLDEPHTTLQLDHKELIESSAASTRSKKKIDTGQNMYDTEHKVAYCPVCDTSYADVETLTKHMWHKHSDIMGPKKRGRPKKVQTSAILKKLSENGMSLSTCEFCKMDYKTKEKLDLHMHIHKDTLLTNCLVCKKVYLSKAYYQQHKCQRNHIDKLQNAEPPDPNILQDRSAQVLLAEIVKSSDAEHEAIECVKVCEACGRVCRSPAELQQHRDADHPELSASCQLCDKSVEVCEACGRVCRSPAELQQHRDADHPELSASCQLCDKYIECGGVRGVRARVPLAGRAAAAPRRRPPRAVRQLPAVRQGACTATRIDTQLQYIECGGVRGVRARVPLAGRAAAAPRRRPPRAVRQLPAVRQGACTATRIDTQLQYIECGGVRGVRARVPLAGRAAAAPRRRPPRAVRQLPAVRQGACTATRIDTQLQYIECGGVRGVRARVPLAGRAAAAPRRRPPRAVRQLPAVRQGACTATRIDTQIQYIECGGVRGVRARVPLAGRAAAAPRRRPPRAVRQLPAVRQGACTATRIDTQLQYIECGGSVEVCEACGRVCRSPAELQQHRDADHPELSASCQLCDKACGRVCRSPAELQQHRDADHPELSASCQLCDKSVEVCEACGRVCRSPAELQQHRDADHPELSASCQLCDKSVEVCEACGRVCRSQAELQQHRDADHPELSASCQLCDKTFASVKTAERHRVTCERVERKFVCNTCGRRFAFEISLNKHILQSHAGQRVSVDFISRQKRQVTCDLCGKTFPSKEQLVRHSIVHKTPKKYECDKCKKKFTRKGNLKSHILRVHESGLSSKGSGLCLYCGRSFNNSSNLIVHMRRHTGEKPYQCDFCGKGFPRSSDLQYHRRSHTGEKPCKCGICGKGFTGSNKLSRHMRVHTGARPYKCPYCDKAFSQSNDLTVHVRRHTGDKPYACDVCGDRFIQGTALHNHRRAHGHYPGTQPVTFTVHTVTQTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -