Piph029549.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730188.1:32440748-32446988[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.3e-06 0.00041 21.7 2.3 1 23 29 51 29 51 0.98 2 18 2.9e-06 0.00027 22.2 0.9 2 23 58 79 57 79 0.96 3 18 0.042 3.9 9.1 4.5 1 19 85 103 85 104 0.97 4 18 1.5e-05 0.0015 19.9 6.9 1 23 140 162 140 162 0.98 5 18 3.7e-05 0.0036 18.7 1.7 1 23 168 190 168 190 0.98 6 18 0.0014 0.13 13.8 2.3 1 23 196 218 196 218 0.97 7 18 8.4e-07 7.9e-05 23.9 2.0 1 23 224 247 224 247 0.98 8 18 0.043 4 9.1 4.6 1 23 256 278 256 278 0.96 9 18 0.00082 0.078 14.5 0.7 1 17 284 300 284 301 0.95 10 18 6.2 5.9e+02 2.3 0.6 2 17 308 323 307 324 0.89 11 18 0.00094 0.089 14.3 1.7 1 23 505 527 505 527 0.98 12 18 0.00042 0.04 15.4 1.1 3 23 535 555 533 555 0.98 13 18 0.077 7.3 8.3 5.2 1 19 561 579 561 580 0.97 14 18 4.6e-07 4.4e-05 24.7 1.5 1 23 589 611 589 611 0.98 15 18 2.3e-06 0.00022 22.5 1.7 1 23 617 639 617 639 0.98 16 18 0.006 0.57 11.8 0.7 1 23 645 667 645 667 0.97 17 18 0.22 20 6.9 1.9 1 23 673 695 673 695 0.92 18 18 2.1e-06 0.0002 22.6 1.9 1 23 701 724 701 724 0.97
Sequence Information
- Coding Sequence
- atgttttttttttcaggtgtGGATCAAATCAATGAAGACATAGATAATACACAAGACACCTGCGAAGCTGAGGCCAAGAAACCGCACAAATGTGATGTCTGTTCTAAGAGGTTTCCGACCAAAAGCTTACTTGTCATTCACACCAGGACACACACAGAAGAAAAACCATTGAGCTGCGATGTTTGCTCCAAGAAATTCTCACAGAAGAGTCAGTTGATCGTCCACAAACGAATACACACAGGTTTCAGACCGTATAAATGTGACAAATGTTCGAAGCAATTCTCTTACTTTAATACTTATACACGTCACAAATGGGCACACACTGGACAGAAGCCCTATAGCTGGGAGGTGTGTCCAATAAGACGCACAATTAAGAGTCACTTCAACGCCATGAATAGTCATATGGGACTCAAGCCATTTTCCTGTGATGTATGCTCAAAGAGCTTCTCGCACAAGTATTACTTGAAGCGCCACATACATAGCCACTCTGATGATAAACCTTACTTCTGTGACATCTGCTCCAAGCAGTACAAACAGAAATTGGATTTGCAGCGGCACCTACTCACTCATTCGGAGACCAAAGGTTTCAGCTGTGAACTCTGTTCGAAAAAATTTACAGAGAGGAGATACTTAGAGTCACATCGTTTTGTACACACGGGCATAAAAAGGTACACCTGTGATGTTTGTACCAAGAAATTTGCAAGAAAAAGCGAGTTGAATAAACATACTAAACGTGTTCACATGGTTCACACGGGCCCGAAACCACACTGTTGTAATATATGTACGAAGTCTTTCCTATACAAGAAGGAATTGAGTCAACATGTTCTGGTGCATACCGGAGAGAAACCATTTAGCTGTGATATATGCTTGAAGAAATTTACACGCAAAAGTAATTTAAAGATCACAGATGTTGAGTGCTGGATGTGTTACATCTGCCACACAAGACTGCGACAATGTCAACAGCTGCAGCAGTTGGCCGTGCAGACACAAGGTGTTACTGAAATTGTTATCCACAATATGtcaCCAAAAACTTTAGTCCGCCTAGTCACACAGAATATTGAAAATGAAACTCTACCATACCATGTTGTGCTAACAAAAAAGGAACATCAGGAATTTGATGTTCAGGAGAGACACTTGGAACATGATGATGTGACTATAAAACCTGAAATTGAGAATACCGAGTATATTGATAAGATTGAAATAGTAGAAAACAGTATTGACTATGGAGCAGAGGAAGAAACCACCATTAAATCCAATAATGCAATTGATGGAACCACACAAGACTCACAGGTTGTGGATAGTGTCTATACACAGCAAAAACAAAAGGTTCCTAAGGTAGTCGTAGCACGACTAAGTCAAAGTGATAATAACAAATATGTCCACCAAAGTCCAACAACACACCTGGATCCCAAGGAAAGTGGGGGTCAGATAGGAGGGAAagGTGAGAATCACAACAAACCGAACAATACAAATAAGACACAAGATGTCAAAAAAGGTGAGATCAAGAAACCACACAAATGTGGTGTCTGTTCTACGAGGTTTCCGACCAAAATCCTACTTGTCACTCACTCCAGGACACACACAAGCGAAAAACCATTTGGCTGCAATGTTTGCTCCAAGAAATTCTCATGGAGGAGTAATTTGACCGTCCACAAACGAATACATACAGGTTACAGACCATATAAATGTGACATTTGTTCGGAGCAATTCTATCACCATTATACTTATACACGTCACAAATGGGCACACACTGGACACAAGCCCTATAGCTGTGAGGTGTGTCCAAAAACTTTCACAAATAAGAGATATTTCAACGCCCACATGAATAGTCATAAGGGACTCAAACCATTTTCCTGCGATGTGTGCTCAAAGAGCTTCTCGATTAAGTATGACTTGAAGCGCCACATGAGTAGTCACTCTGAAGATAAACCACACATCTGTGATGTCTGCTCCAAGCCGTACAAATGGATGACTGATTTGCAGCGGCACATACTCACTCATTCGGTGAACAAAGCTTTCAGCTGTGAAGTCTGTTTAAGAAAATTTAGAGAGAAGAGATGCTTAGTGTTACATAGTGTTGTACACACGGGCATAAAAAATTATACCTGTGACATCTGTGCCAAGAAATTTGCAAGAAATAGCGAGttgaaaaaacatattaaacatGTACACAagtatatgtaa
- Protein Sequence
- MFFFSGVDQINEDIDNTQDTCEAEAKKPHKCDVCSKRFPTKSLLVIHTRTHTEEKPLSCDVCSKKFSQKSQLIVHKRIHTGFRPYKCDKCSKQFSYFNTYTRHKWAHTGQKPYSWEVCPIRRTIKSHFNAMNSHMGLKPFSCDVCSKSFSHKYYLKRHIHSHSDDKPYFCDICSKQYKQKLDLQRHLLTHSETKGFSCELCSKKFTERRYLESHRFVHTGIKRYTCDVCTKKFARKSELNKHTKRVHMVHTGPKPHCCNICTKSFLYKKELSQHVLVHTGEKPFSCDICLKKFTRKSNLKITDVECWMCYICHTRLRQCQQLQQLAVQTQGVTEIVIHNMSPKTLVRLVTQNIENETLPYHVVLTKKEHQEFDVQERHLEHDDVTIKPEIENTEYIDKIEIVENSIDYGAEEETTIKSNNAIDGTTQDSQVVDSVYTQQKQKVPKVVVARLSQSDNNKYVHQSPTTHLDPKESGGQIGGKGENHNKPNNTNKTQDVKKGEIKKPHKCGVCSTRFPTKILLVTHSRTHTSEKPFGCNVCSKKFSWRSNLTVHKRIHTGYRPYKCDICSEQFYHHYTYTRHKWAHTGHKPYSCEVCPKTFTNKRYFNAHMNSHKGLKPFSCDVCSKSFSIKYDLKRHMSSHSEDKPHICDVCSKPYKWMTDLQRHILTHSVNKAFSCEVCLRKFREKRCLVLHSVVHTGIKNYTCDICAKKFARNSELKKHIKHVHKYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -