Piph005648.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730179.1:5233642-5285117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0019 0.18 13.3 0.2 1 23 506 528 506 528 0.97 2 17 5.2e-06 0.00049 21.4 1.7 1 23 543 565 543 565 0.99 3 17 0.00027 0.025 16.0 2.1 1 23 571 593 571 593 0.97 4 17 0.00027 0.025 16.0 2.1 1 23 673 695 673 695 0.97 5 17 0.00075 0.071 14.6 2.7 1 23 702 724 702 724 0.99 6 17 4.8e-05 0.0046 18.3 0.3 1 23 730 752 730 752 0.91 7 17 7.1e-06 0.00067 21.0 0.1 1 23 758 780 758 780 0.97 8 17 3.5e-05 0.0033 18.8 2.4 1 23 786 809 786 809 0.96 9 17 0.00047 0.044 15.2 0.9 1 23 815 838 815 838 0.94 10 17 0.00014 0.014 16.9 0.8 2 23 845 866 844 866 0.97 11 17 1.2e-05 0.0011 20.3 1.3 1 23 872 894 872 894 0.97 12 17 0.00077 0.073 14.6 0.1 1 21 900 920 900 921 0.96 13 17 0.00077 0.073 14.6 0.1 1 21 939 959 939 960 0.96 14 17 0.00077 0.073 14.6 0.1 1 21 978 998 978 999 0.96 15 17 0.00077 0.073 14.6 0.1 1 21 1017 1037 1017 1038 0.96 16 17 0.00077 0.073 14.6 0.1 1 21 1056 1076 1056 1077 0.96 17 17 0.00077 0.073 14.6 0.1 1 21 1095 1115 1095 1116 0.96
Sequence Information
- Coding Sequence
- ATGAATTGGACGGGGCAATGTTTTATATGCAACCAAACTGCATATGTTATGAAGGGTGGAGCAGAGATATTTAACAGCAAGAAACCCTTGAAATCGGAGAAGGAGCTACCATCTGTTATCAGTGAGATAATAAAGAAGCCGGTGGCCAAGGGTCTGACACATTCCACTGTGCTGTGCAGCAAATGCAACAAGATGGTTGTGGAATATGATCTACTGGTTACAAGGTGTCAAAAGATAGAGAACGACGTTTTGGAATTGTTTAAAGCGACTCTGAAAAAATTGGAAATGGGCTACGATAACTATGCTAGCACAGAAGTATTGGAAGATGAAACCGTACAGGTCAAACCGATCATCATTACTCGGACCAAACCGGAACCGAAGGCTGATCCGAAGATTGTGTTGTCTGCGTCCAAACTACAGCCGCTGCCACCAAATTTTGTGCTACGACCAAATATTATGCCGGATGTGAAGAAGAAAGTTGATCTACCTATTGTTGCTAAGTTGAAGCCCGTAGATAAAGAACAAATGGACACTCACTCGGAAGACATAGCAGAACAGACTGAGTTTTCATCGCTGCTCAAGTTCAATGAGACGAACTTACACAATTACTCGTTGAGTGCATTCAGTGTGGACAGTGATGTGAAGGTGGAGAGCGATGATAATGTTAATGGTGATGATAATCCTATGGAGATTGATGAAGAGTGCACGCTTACGGACAGCAATCTCGAGACAAGTATACTGCAGGGTATGGGGGAGGGGTTCGTGAGAATAGTACCAGCCGACACCGGTGACACTGCAGACAACGAcaggagtgatgatgatgagggCCACACAATAGTAATGGACGAGGACGGCTCCATAATCCGTGTTGTGTCCGGGCAGCGGTTCATGCTGGGTGACCAGGAGATATCGCTGCAGGTGATGCCCGATGGAGAGGCACTCGGAGATGGTCAAGACACAATAGTAATGGATGAGGACGGCTCCATAATCTGTGTTGTGTCCGGGCAGCGGTTCATGCTGGGTGACCAGGAGATATCGCTGCAGGTGATGCCCGATGGAGAGGCACTCGGAGATGGTCAAGACACAATAGTAATGGATGAGGACGGCTCCATAATCTGTGTTGTGTCCGGGCAGCGGTTCATGCTGGGTGACCAGGAGATATTGCTGCAGGTGATGCCCGATGGAGAGGCACCCGGAGACGGACAAGATTCTAACGACGAGTCGCAGATCGAGCTGCAAGTATCGGGCGATGAGGAGACGGCGAACGCCATCATAGCGGCAGCGCAGGAGAAAGgtgGTGCGTTCATCAAAGTGGAGTCGGGTGAGATGTATCGAGTTGAGTCTGTGGAGAGTAAGGATGACAGCGACGAAGGCGCGGATATACAGGTGGAGAGGAAAGCTGAGGGTCTGTTCAGGTGTAAATTCTGCGAGAGATATATGAAAGCTGaCAAAGTATTCGAGGGGGACGCCGCATCCATGATGTCACATCTCAAGGCGATACACGACGCGCGTATATACATATGTACCGTGTGCGGGAAGATTATACGAAGAAAGGCGGAATATGGGAAGCATTTGAgCAGTCACAGTACGGGCGACAGCGCTGTTCTCGAGAAGGGAAAAATGTATTATGAGTGTAACGAGTGCCACAAGAAATTCTCATCGCGAGTTCTACTAGCGGAGCACCTCAACACGCACGTGGGGGCGCGGCCCTACGTCTGCGGGGAGTGCGGCAAGGACTTCGCCAACAAGTATACCTACCAGGCGCACTGCAAGACGCACACGATCGCGAGTTCTACTAGCGGAGCACCTCAACACGCACGTGGGGGCGCGGCCCTACGTCTGCGGGGAGTGCGGCAAGGACTTCGCCAACAAGTATACCTACCAGGCGCACTGCAAGACGCACACGGTGAGTCATACTACGCTACACTACACTACGACACATCGCAACACTACTATACACTCAGATCGCGAGTTCTACTAGCGGAGCACCTCAACACGCACGTGGGGGCGCGGCCCTACGTCTGCGGGGAGTGCGGCAAGGACTTCGCCAACAAGTATACCTACCAGGCGCACTGCAAGACGCACACGAACCGCCCTCGTCCGTTCAAGTGTACCCAGTGCGAGAAGTCGTTCCTGTCACAACAGAACCTGTCGCAACATGAGAAGACCCACTCCGGGATTAAAGACTTTCTGTGCAAGATTTGTGGCAAAGCGTTCGGCACGCAGCACAATCTCGAAGTCCACGGTGTAGTTCACTCCCGTCGGAAGGCGTTCGCGTGTCGCGAGTGCGGGAAGGCGTTCGCGAGACGAGCGGAGCTGAGAGACCACGAGCGGATACATACAGGCGAGCGGCCATTCGAGTGCGAGATCTGTCACGCTCGCTTCACGCAGCGGTCCAACCTCTATTCACATCGGCGCGCGACTCACACGGACGACAAGCGATACGCGTGCGACCGGTGCCCCAAGCGGTTCAAGCGCAAGCGTCTCCTGGACTACCACATCCAGGCGTCACACACGGGCGAGCGGCCGCTGACGTGTGACGTCTGCAACGCCAAGTTCGTGTACCCAGAACACTACAAGAAGCACATGCTGATACACAGCGGCGCTAAGCCTTTCCAGTGCGAGATCTGCGGCAAATCCTTCAGCTCGCGCGACAACCGCAACATGCATCGCTTCGTGCACTCCGACCGCAAGGCGTACGAGTGTCTCGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTACGCGCACATGAACCAGCGGGTGAGCAGCTATTTTACAGCACGGCGACAGCACAGCGACAGCAAGGCGTACGAGTGTCTCGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTATGCGCACATGAACCAGCGGGTGAGCAGCTATTTTACAGCACGGCGACAGCACAGCGACAGCAAGGCGTACGAGTGTCTCGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTATGCGCACATGAACCAGCGGGTGAGCAGCTATTTTACAGCACGGCGACAGCACAGCGACAGCAAGGCGTACGAGTGTCTCGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTATGCGCACATGAACCAGCGGGTGAGCAGCTATTTTACAGCACGGCGACAGCACAGCGACAGCAGGGCGTACGAGTGTCTCGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTACGCGCACATGAACCAGCGGGTGAGCAGCTATTGTACATCACGGCGACAGCACAGCGACAGCACGGCGTACGAGTGTCTTGTCTGCGGGGCCAGCTTCATGCGCAAGACCCTGCTGTACGCGCACATGAACCAGCGGTATCAGAATTCTGAAGACAGCTCGAACGCAGAAGGAACAGCAACGacaTCCGAGCCAACAGAAGTGGCTGATACAACCGAGAGTAACATTATAGGGACAACTCTAAACATAGCTCAAGACGGAGCGACCACCATGTTAGCTATACACAATGCTGACGGAGAACTGAAAACTGACGAGGGCTTGCTGCAGACGTTTTCGGTTGAGCAGTTGGATCAGTCCAtgtTGTCTGACAACGTGCTGGTGTCTGCGGAGGGACAGCAGCGACCTGTGATGAGGCTGGTGCAACTTCAGCTAAGAGACGGCAACACTAAGTGGGTAGCTGTCGATGGTTAA
- Protein Sequence
- MNWTGQCFICNQTAYVMKGGAEIFNSKKPLKSEKELPSVISEIIKKPVAKGLTHSTVLCSKCNKMVVEYDLLVTRCQKIENDVLELFKATLKKLEMGYDNYASTEVLEDETVQVKPIIITRTKPEPKADPKIVLSASKLQPLPPNFVLRPNIMPDVKKKVDLPIVAKLKPVDKEQMDTHSEDIAEQTEFSSLLKFNETNLHNYSLSAFSVDSDVKVESDDNVNGDDNPMEIDEECTLTDSNLETSILQGMGEGFVRIVPADTGDTADNDRSDDDEGHTIVMDEDGSIIRVVSGQRFMLGDQEISLQVMPDGEALGDGQDTIVMDEDGSIICVVSGQRFMLGDQEISLQVMPDGEALGDGQDTIVMDEDGSIICVVSGQRFMLGDQEILLQVMPDGEAPGDGQDSNDESQIELQVSGDEETANAIIAAAQEKGGAFIKVESGEMYRVESVESKDDSDEGADIQVERKAEGLFRCKFCERYMKADKVFEGDAASMMSHLKAIHDARIYICTVCGKIIRRKAEYGKHLSSHSTGDSAVLEKGKMYYECNECHKKFSSRVLLAEHLNTHVGARPYVCGECGKDFANKYTYQAHCKTHTIASSTSGAPQHARGGAALRLRGVRQGLRQQVYLPGALQDAHGESYYATLHYDTSQHYYTLRSRVLLAEHLNTHVGARPYVCGECGKDFANKYTYQAHCKTHTNRPRPFKCTQCEKSFLSQQNLSQHEKTHSGIKDFLCKICGKAFGTQHNLEVHGVVHSRRKAFACRECGKAFARRAELRDHERIHTGERPFECEICHARFTQRSNLYSHRRATHTDDKRYACDRCPKRFKRKRLLDYHIQASHTGERPLTCDVCNAKFVYPEHYKKHMLIHSGAKPFQCEICGKSFSSRDNRNMHRFVHSDRKAYECLVCGASFMRKTLLYAHMNQRVSSYFTARRQHSDSKAYECLVCGASFMRKTLLYAHMNQRVSSYFTARRQHSDSKAYECLVCGASFMRKTLLYAHMNQRVSSYFTARRQHSDSKAYECLVCGASFMRKTLLYAHMNQRVSSYFTARRQHSDSRAYECLVCGASFMRKTLLYAHMNQRVSSYCTSRRQHSDSTAYECLVCGASFMRKTLLYAHMNQRYQNSEDSSNAEGTATTSEPTEVADTTESNIIGTTLNIAQDGATTMLAIHNADGELKTDEGLLQTFSVEQLDQSMLSDNVLVSAEGQQRPVMRLVQLQLRDGNTKWVAVDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -