Piph027528.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730188.1:8049018-8057846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 1.1 1e+02 4.7 0.4 2 23 19 41 18 41 0.95 2 29 2.1 2e+02 3.7 0.1 1 23 63 86 63 86 0.90 3 29 0.17 17 7.1 0.9 3 20 93 110 91 112 0.80 4 29 0.051 4.8 8.8 2.7 1 23 120 143 120 143 0.92 5 29 5.1e-05 0.0048 18.3 0.1 2 23 149 171 148 171 0.93 6 29 0.0057 0.54 11.8 0.1 2 23 176 198 176 198 0.94 7 29 0.00079 0.075 14.5 0.6 1 23 239 261 239 261 0.98 8 29 0.018 1.7 10.2 0.1 2 23 289 311 288 311 0.95 9 29 0.0012 0.11 14.0 3.3 2 23 332 354 332 354 0.97 10 29 8.4e-05 0.008 17.6 0.3 1 23 359 382 359 382 0.97 11 29 0.00057 0.055 15.0 0.4 1 23 387 410 387 410 0.96 12 29 0.0065 0.61 11.7 1.6 3 23 414 435 413 435 0.95 13 29 0.035 3.3 9.4 2.2 2 20 445 463 445 465 0.94 14 29 0.0064 0.61 11.7 0.9 1 23 522 545 522 545 0.96 15 29 0.0036 0.34 12.5 0.2 2 23 618 640 617 640 0.95 16 29 0.00058 0.055 14.9 0.3 3 23 647 668 645 668 0.93 17 29 0.0058 0.55 11.8 5.3 2 23 673 695 672 695 0.93 18 29 0.0012 0.11 14.0 1.9 1 23 700 723 700 723 0.95 19 29 3.3e-05 0.0032 18.8 4.7 1 23 727 750 727 750 0.97 20 29 0.0068 0.65 11.6 1.7 2 23 757 778 756 778 0.96 21 29 3.9e-05 0.0037 18.6 0.5 1 23 784 806 784 806 0.97 22 29 0.0061 0.58 11.7 0.3 3 23 947 968 946 968 0.93 23 29 0.06 5.7 8.6 0.2 1 23 973 996 973 996 0.91 24 29 0.32 31 6.3 3.1 1 23 1001 1024 1001 1024 0.94 25 29 0.097 9.2 8.0 0.7 2 23 1030 1052 1030 1052 0.92 26 29 0.00051 0.048 15.1 0.1 2 23 1060 1082 1059 1082 0.97 27 29 0.0027 0.26 12.8 0.2 2 23 1089 1110 1088 1110 0.97 28 29 4.5e-05 0.0042 18.4 2.3 1 23 1117 1139 1117 1139 0.95 29 29 6.8e-05 0.0064 17.9 2.1 2 23 1146 1168 1145 1168 0.95
Sequence Information
- Coding Sequence
- ATGTCGTTACGGGGAAGGCTGGAACGAACTCTCAAAATCGATACATCCGTTATCTCCTGCAAGCTGTGTCACACATCTATGCAGGACGTGGACTCTTTGATCGACCATTTGATGTCGGAACACGAGGCGCGATACGATAAATCCGTCGATAATAATTTGCAACCCTTCAAATTGATCAAAGATAAATACCCGTGTCCGGTTTGTGAAGAGGAGTATCTGTTCTTTGGCAAATTGTTGAGTCACATGTCTCAGGAGCACTCGGAAAATAAACATTTGTGCATGCACTGCGGCAGGTCTTTTCGAAGCGCGCCCGGCTTCCGGTTTCACGTGAGAAATTGTCGCGGGACAACGGCCACTTTCAAATGCGACGTGTGTCACTTGGAGTGCTCGTCGAAGAGCATTTTACAACGTCACTTAGGGAACGAACATAATATCAAGAGGATAAAATGTAACGTATGCGGTGAGAAATTCACGGCGAGATATGCCTTAAACAGACACATGATTGACGCGCACGACTCCGGGAACGTGTGCCAGTATTGCGGAAAACAATTCCCCGGCAACTACTTTCTAGTGGACCACGTTGAAAAAATCCATTTGAAAGAGAAAGGTGTTAAATATGAATTCCAAGGCCTCTACAGTTCTGAACGGAAAAGGAGAAATTTACATATAATCTTCAACAACACATCCATCATCCCTTTTAAATGGAAAAAACAATACGTTTGCTTTTACTGTGGCGAGGCTTATGCCGAATACGAGGAGTTCAGGAAACACACAAAATCACACGGAATGTGCACAACGAGCGATCATGCGTTGAAAATGATTAACAGGAGGTACATAGAAGTCAAATTAGATATCTCGGAGATTTATTGCGAAATTTGCGATGAaacatttcaaaacttcaaaGAAATTATTGATCATCTTATAACAGAGCACAAGGTCGAGTACGACAAGGACGTAGACATGCTGTTTCAGGAGTATAGACTCGCCGATAACCGTTGTCGATATTGTGATGAAGAATTTACTCACTTTGGAAGTTTACTACATCATATGGAAACCTTACACACCCCGAAGGATTTCATTTGCGACAATTGTGGTGCAGGCTTTAAGaagaaaattaatttatcgAACCATCTCCGTATTTACCACCGCGACGGTGGCTACGCCTGCGAACTTTGCTCAGAAATATTCGACTCTCAAGTTTGGTTAAGAAAACATCAAAAAAACTTCCATCCCAGAGATTGTAAAGCTTGCAACACTAGTTTTCCGTCCTGTACACTGTTACAAAAACATATCGAGCGAGACCACCCGGACGACGGTGATCTAAAATGTGCATACTGCCATTATTGCTTTAAAAAGTTCCATACTACGCAGGAGCTCATACAACACATCGGTAGGTGCAAAATGAAAATGCAAGTGAACGTCTCGCACGATACAAACCCGAGTAGCACAGGTGGCAACGGAATACGACCGAGGAAGGGGCATAATACTTTGCAAATGAGGAAAAACATACACACCGTTTTAGACTTATCGACGGCCGTACCGTTTAGGTTTACCTATTCTACATTCAGTTGTTTTTATTGTCCACAAAAGTTTATTGAATTCGACGATCTCAGAGAACATACGCTAAAGGATCATCCCGTCTGCGAGTTGAAAAGTAAATACTTGAAGAGATGTAAAGGCGACCGAGTCACCGTCAAGATAGACATATCGTCGTTGTCCTGCACGGTTTGCCGACTGCCGATAGAAGGTTTCGACGATTTAATAGATCACATTATCAGTGAACACCGATCGCCCTACGATAAGTCCATAGCGGGCTGTTTCGAGCTCTTCAAAGTGGCAAAGGACAATATACCCTGCCCGCACTGCCCGAGAGTCTTTCGATACTTCGGTATTCTCCTTAAACATATCAACTCGGACCACAACGACAACAGAATTATCTGCGATTTCTGCGGCAAGGGTTTCAAGCTGGTGTCGAATTTGAAAATACACATAGAGCACGTCCACACCGGATCTTGCGAGTGCGAAATTTGCGGAACCAAATTAAAAAATCAGTCGTGCCTAAAACGGCACAAGGCTAAATATCACAACGAGAAGGATTTCAAGTGTCCGAAATGCCCGGAGCGATTCGAGAGCGAGTACCACAAACGGAAGCATCTGATCCAGGCGCACGACATCGGGCACAGATGCAGCTACTGCGACAAGATATTCACCAGGAACTCCTTCATGAAAGATCACATACGGCGGACGCACTTGAAGGAGAAGGACGTGGTCTGCTCGGTCTGCAACGACAGGTTCTTCAACAACTACCATTTGAAGTTGCACATGGTGAGACACCAGGGCCAGCGATCGTTTATCTGCGACGTGTGCGGCAAAACTTTCCTGCGTCGAAGAAATTTGAGCACCCACATGGAGATACATAAGAAGTATGGTGCAAAATTATGTTCGACAGTGGATAAAGCAAAGTCAATAAAACAGAGAAACGTCGAATACGTTTTGGAGTACAGCAACGCTACACCATTTTTATGGCACCTAGGATATTATAGATGCTTCTTCTGCCTCGGACAGACGAAAGATCCGAATACGTTAAGGGACCATACTGTCCAAGCTCACCAACTGGACAACCTGGAGCTCATAATTCGCGATAGGTTCAAAGGATCCAGGAGGAAAGAAGACGCCGTCAAAATTGATGCAACGGATTTAATGTGCATCCAATGCCCGCAGGCCATGGACTCGCTAGAGGAGTTGGTGCAACATTTGATCATAGCTCACGACGTCGATTACGACGTCAGCGAGCAAAATTGCCTCCTGCCTTTCAAACTCGACAGGGAGCGACCTTCGTGTGGGATGTGTAACCTGGTCTTTTCCTCCTTTGAATCTCTCCTCCGTCACGCGAACCAGGATCACCTCTCGCACCGCTACATTTGCGACGTCTGCGGAATGAGCTTCCGGGGCGAACAACCGATGGCTATGCACAAGCGATACTATCATAAAGACGGCGGGCACAAATGTAATCGTTGTAACGCCAGTTTCAACACGCTCCAGCAAAAGATGTCCCACGAAAAGAACGTTCACGGAGAAAACACGCCCTACTGCTCCCTCTGTTCGGAAACATTTAAAAGTGTCTATCTTAAGAAACGACACTTGGCTAACGTTCATCGAGTGGAGGAGCTGCGAGTGAAGTGCCCCTACTGCCCTAGAATATATCCCACTAAAGGCTTAATTACGCGTCACGTGAAACGCGtgcatttaaaagaaaaaaatgtgcAGTGCTCCGTCTGCTCGGAAAAGTTCTTTGCACCGTATGATTTAAAAATGCATATGGCGAAGCATACCGGTGACAGGAGACATTTTCTCTGCTCCGTTTGCGGAAAGAAATTCATAAAAAAGAGCCATTTAGATTATCATATCCTGACACATAGCGACAAAAAACCATGGTCATGTCCAGTATGCGGGAAGGGGTTTACTTTTCGGCATAATATGAAGACTCATTTGAAGAATACGCATCTACAAAACGATGCTGCAAAAGATGTTATAGAAACTGTGACGAAAAAAAAAGACCATATACAAATTCTAGATAACGTGCTGATCGGGTAG
- Protein Sequence
- MSLRGRLERTLKIDTSVISCKLCHTSMQDVDSLIDHLMSEHEARYDKSVDNNLQPFKLIKDKYPCPVCEEEYLFFGKLLSHMSQEHSENKHLCMHCGRSFRSAPGFRFHVRNCRGTTATFKCDVCHLECSSKSILQRHLGNEHNIKRIKCNVCGEKFTARYALNRHMIDAHDSGNVCQYCGKQFPGNYFLVDHVEKIHLKEKGVKYEFQGLYSSERKRRNLHIIFNNTSIIPFKWKKQYVCFYCGEAYAEYEEFRKHTKSHGMCTTSDHALKMINRRYIEVKLDISEIYCEICDETFQNFKEIIDHLITEHKVEYDKDVDMLFQEYRLADNRCRYCDEEFTHFGSLLHHMETLHTPKDFICDNCGAGFKKKINLSNHLRIYHRDGGYACELCSEIFDSQVWLRKHQKNFHPRDCKACNTSFPSCTLLQKHIERDHPDDGDLKCAYCHYCFKKFHTTQELIQHIGRCKMKMQVNVSHDTNPSSTGGNGIRPRKGHNTLQMRKNIHTVLDLSTAVPFRFTYSTFSCFYCPQKFIEFDDLREHTLKDHPVCELKSKYLKRCKGDRVTVKIDISSLSCTVCRLPIEGFDDLIDHIISEHRSPYDKSIAGCFELFKVAKDNIPCPHCPRVFRYFGILLKHINSDHNDNRIICDFCGKGFKLVSNLKIHIEHVHTGSCECEICGTKLKNQSCLKRHKAKYHNEKDFKCPKCPERFESEYHKRKHLIQAHDIGHRCSYCDKIFTRNSFMKDHIRRTHLKEKDVVCSVCNDRFFNNYHLKLHMVRHQGQRSFICDVCGKTFLRRRNLSTHMEIHKKYGAKLCSTVDKAKSIKQRNVEYVLEYSNATPFLWHLGYYRCFFCLGQTKDPNTLRDHTVQAHQLDNLELIIRDRFKGSRRKEDAVKIDATDLMCIQCPQAMDSLEELVQHLIIAHDVDYDVSEQNCLLPFKLDRERPSCGMCNLVFSSFESLLRHANQDHLSHRYICDVCGMSFRGEQPMAMHKRYYHKDGGHKCNRCNASFNTLQQKMSHEKNVHGENTPYCSLCSETFKSVYLKKRHLANVHRVEELRVKCPYCPRIYPTKGLITRHVKRVHLKEKNVQCSVCSEKFFAPYDLKMHMAKHTGDRRHFLCSVCGKKFIKKSHLDYHILTHSDKKPWSCPVCGKGFTFRHNMKTHLKNTHLQNDAAKDVIETVTKKKDHIQILDNVLIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -