Piph003413.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyommatus iphigenia
Gene Symbol
-
Assembly
GCA_963422495.1
Location
OY730178.1:10733984-10759860[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.7e-06 0.00045 21.5 5.4 1 23 113 135 113 135 0.99
2 16 2e-06 0.00019 22.7 0.5 1 23 276 299 276 299 0.97
3 16 0.00056 0.053 15.0 1.5 2 23 302 323 301 323 0.95
4 16 2.5e-07 2.4e-05 25.5 0.9 1 23 330 352 330 352 0.97
5 16 3.8e-06 0.00037 21.8 1.5 1 23 358 380 358 380 0.98
6 16 1.8e-06 0.00017 22.8 1.1 1 23 386 408 386 408 0.95
7 16 1.8e-06 0.00017 22.9 1.1 1 23 414 436 414 436 0.98
8 16 7.2e-05 0.0068 17.8 2.0 1 23 442 464 442 464 0.97
9 16 0.00061 0.058 14.9 0.4 1 23 470 492 470 492 0.97
10 16 0.016 1.5 10.5 5.3 1 23 498 520 498 520 0.98
11 16 7.1e-06 0.00068 21.0 1.6 1 23 526 548 526 548 0.98
12 16 2.7e-07 2.6e-05 25.4 1.6 1 23 554 576 554 576 0.99
13 16 0.00033 0.031 15.7 4.4 1 23 582 604 582 604 0.99
14 16 9e-05 0.0085 17.5 0.2 1 23 610 632 610 632 0.97
15 16 6.4e-05 0.0061 18.0 0.5 1 23 637 659 637 659 0.98
16 16 0.00022 0.021 16.3 1.8 1 22 665 686 665 689 0.91

Sequence Information

Coding Sequence
ATGGAGGATCCAACTAATTTTGTTGCTATCAAGGAAGAGCTTCAGGAAATTGATCaatGTACAAGTGAAGTAATCAGGAGATTAAATTATGATGCTAGTGAAtcaaattttgaagaatgtgaTATATCACTCAATGCTGTACAAGATGATGATACagAGTATCTTCAGGTGGAAATTAATCCTGGGAATATCAAGACTGAGCCATATGACGAGGAAGCCACCACGTCCAATATACACATCAAACTGGAGCCTCTtgaTAATGAGGAAGAATATGAGTTTAATCCGGAAGGCTGCTTCCCAGTGCCAAAAGAAACGAAACTGCCGGAGGAGAGAAGATACGTCTGTAATATTTGTGACAAGAGGTTCATACAGCTCTGTCATTTGAAAACTCATCAGCGAATGCATACAGAATATATCGAAGAAATGAACACAGACGTCTGTTTGTCGTGCTTTGCTTGTGATGTTAGAATATTTGATATCAAAGGCACTCACTTACATTCTGTCTTCGAGGAGATATCAAATAATAAGGCAGAAGACAAATCGTTAGTTCCAGTTACGAGGGTGAAAGTCGGAGTGTTTTCCCTGTATGATGATGTTCCTGCCCAGAAGGCAAAGAACATTGGAGAGGAATGTATTTATGAAGATAGAGAAATCACAATTGAGAATATTCAAATCAAACTGGAGCCAGCAGAGGATTCTAACGACGATGAGGAAGTCAATTCTGATGTTAAAATCGAGCCTACAAGTGACGACGAGAATGACATATCGTATGAACCAGAAGAGAAAGAAGTAAAAAAGCGACGCACGCGGCCTACCAGTAAAGAGTATGCTTGTGATGAATGCAGCAAGAAATTCAACCAGCCCGCTTACCTCAAAAAACACATTCAACGAATACACGACAAAAGATGTGACGTTTGTAAGAAAAAGTTTAGTACGGAAAAGCTTTTAGAAGAACATAAGCTGCTACATACGGAGGAAGGCAAACCATTTGTGTGTGAGGTCTGCACGAAGAGTTTTACACGGAGCGATAGCTTAAAAAAGCATATACTGCTGCACCAAATCAGAAAACCGTACTCCTGTGATGTGTGCCAGAAAAGATTTACAAGACCGGACACGTTGAAGAGCCATAAACTATCACACAACGACGGCAGAACATTTGTTTGTGATATATGCAAGAAGAAATTTGCTCGGAACAGTGATTTAAAAAAGCACAAAGTGATACATACAGGTGCCAAACCGTTTAGCTGTGATCTATGTGATATGAAATTTACTCAAGCGGGCAATTTAAAAAAGCATCGACTAACGCACAGCACTATCAAGGACTATGTATGTGATATATGCAATAGAAACTTCACTTCGATCGGTCATCTAAAATCACATAAGTCATCGCACACAAGCAACGAAATGTTTGCATGTGACATTTGCAATCTACCCTTCCTAACGATCAGTAATTTGAAGTCACACAAACGTACACACATAACAGAGAAACAATACACATGCGAGTTCTGCAGCAAGAAATTCCACGATCATGTAACGATGGTCCGCCACATTAAGTTACATAAAGGTGAGCTAGCTTACAACTGTGATATGTGTGAGAAGAAATTCGCTAAAAGCAGTTCTCTAATCAGTCATAAAAGAACTCATACGGGCGAAACACCTTACAGTTGTGAGCTCTGTGACCGAAAATTTGTGTATAGCAGTACGTTGAACAACCATATGCGAACACATACAGGTGAGAAGCCATACAGCTGTGATATATGCGGAGAAACGTTCCTACATTGCAGCTCGTTCAACGCTCACCGAAGAACACATACGGGGGAGAGACCATACAACTGTGATATATGTGGAAAGACGTATACGGCATTGGGGAGTTTGAACACACACAAATTAATACATTCGGGCAAAATGTATACGTGTGAGGTGTGTGACAAGAATTTCCTGAAGCCGAGCAGTTTGAAGTCACACCAACTTATTCACACGGGTGACAAAAGGTATAGCTGCGATGTATGTCCAAGAATGTACTATCAGCTTCATAATCTGAACCGACACAGACAGAACTATGGCCATTTTATTAGTCCGCCAAATGCTGTAGAAATCAAAGTTGAAAATCAGTAA
Protein Sequence
MEDPTNFVAIKEELQEIDQCTSEVIRRLNYDASESNFEECDISLNAVQDDDTEYLQVEINPGNIKTEPYDEEATTSNIHIKLEPLDNEEEYEFNPEGCFPVPKETKLPEERRYVCNICDKRFIQLCHLKTHQRMHTEYIEEMNTDVCLSCFACDVRIFDIKGTHLHSVFEEISNNKAEDKSLVPVTRVKVGVFSLYDDVPAQKAKNIGEECIYEDREITIENIQIKLEPAEDSNDDEEVNSDVKIEPTSDDENDISYEPEEKEVKKRRTRPTSKEYACDECSKKFNQPAYLKKHIQRIHDKRCDVCKKKFSTEKLLEEHKLLHTEEGKPFVCEVCTKSFTRSDSLKKHILLHQIRKPYSCDVCQKRFTRPDTLKSHKLSHNDGRTFVCDICKKKFARNSDLKKHKVIHTGAKPFSCDLCDMKFTQAGNLKKHRLTHSTIKDYVCDICNRNFTSIGHLKSHKSSHTSNEMFACDICNLPFLTISNLKSHKRTHITEKQYTCEFCSKKFHDHVTMVRHIKLHKGELAYNCDMCEKKFAKSSSLISHKRTHTGETPYSCELCDRKFVYSSTLNNHMRTHTGEKPYSCDICGETFLHCSSFNAHRRTHTGERPYNCDICGKTYTALGSLNTHKLIHSGKMYTCEVCDKNFLKPSSLKSHQLIHTGDKRYSCDVCPRMYYQLHNLNRHRQNYGHFISPPNAVEIKVENQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-