Basic Information

Insect: Polymixis flavicincta
Gene Symbol: -
Assembly: GCA_949987655.1
Location: OX465200.1:6315583-6350019[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0085 1.1 11.3 2.1 1 23 332 354 332 354 0.99

2 11 0.0079 1 11.4 1.2 2 23 362 384 361 384 0.95

3 11 1.5 1.9e+02 4.2 0.2 1 23 388 410 388 410 0.93

4 11 0.00057 0.071 15.0 0.9 1 23 415 438 415 438 0.97

5 11 0.00013 0.016 17.0 0.4 1 23 442 465 442 465 0.98

6 11 3.7 4.7e+02 3.0 2.0 3 21 479 497 478 502 0.93

7 11 0.1 13 7.9 0.2 1 11 588 598 588 602 0.88

8 11 1.4e-06 0.00018 23.2 2.2 1 23 959 981 959 981 0.98

9 11 0.0014 0.18 13.7 0.1 3 22 990 1009 988 1009 0.95

10 11 3.9e-05 0.0049 18.6 1.8 1 23 1011 1033 1011 1033 0.94

11 11 0.00033 0.041 15.7 0.2 1 23 1039 1062 1039 1062 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0085	1.1	11.3	2.1	1	23	332	354	332	354	0.99
2	11	0.0079	1	11.4	1.2	2	23	362	384	361	384	0.95
3	11	1.5	1.9e+02	4.2	0.2	1	23	388	410	388	410	0.93
4	11	0.00057	0.071	15.0	0.9	1	23	415	438	415	438	0.97
5	11	0.00013	0.016	17.0	0.4	1	23	442	465	442	465	0.98
6	11	3.7	4.7e+02	3.0	2.0	3	21	479	497	478	502	0.93
7	11	0.1	13	7.9	0.2	1	11	588	598	588	602	0.88
8	11	1.4e-06	0.00018	23.2	2.2	1	23	959	981	959	981	0.98
9	11	0.0014	0.18	13.7	0.1	3	22	990	1009	988	1009	0.95
10	11	3.9e-05	0.0049	18.6	1.8	1	23	1011	1033	1011	1033	0.94
11	11	0.00033	0.041	15.7	0.2	1	23	1039	1062	1039	1062	0.93

Sequence Information

Coding Sequence: ATGTACCGATTACAAGACTACGGTTTAGACAAAATGTATCAAGATATAATGGGAAAGGCGCCGAGTTCGGATACAAACAACCGACTACCGATGGGCGTCTGCTGGGAGTGCACTGCACGGCTGCAGGCAGCCGCTTCATTCAGATCTAAAGCGCTGTTCAGCGATGCCTTGCTGCAAGATCATTTGAAGAACAATACTGATGAAGTGTTCAAATTCAATAGCAACAATAAGGAAGAACACGCCCCAAACACGTTAATAAAAACCGAAGTCATAGGTATACCTCATAACGAGGAAATCGAGGTAGAATTACAAAACTTAGTTAGAAACAAAATAACTATAAAAGACGAGGGAAGAAACGAAATTATCGAAGAGACTTATCACAGTGCTGATGTCAAAACCGAAATCGATCTTATACCTATAACCGAAATTGAGATCGGTGAGAAAGAAACCGATTTAGAagaagatgatgataatgatatagTTTCGGAAAGTATTTACATAAACGATGCGAAAGTAGGCTTTGATAAAGTTGTCTTACTTAAAAATGAAGAACAAATTGAAACATTGAAACTCTCTAATAGCATATGTGATAGTAATGACGAAAATGAACTAACAAATCCCTCTAAGAGTTTCGACAGTCCTGATGAAGACCACGTAGCTGTAGTTGATGATGTGATCACCGTTTGTGATGGTGACGATGATCGAACTTATGTAAATGATGATATAATAACACCCGTCGCCAATGAAGCAGTTGTTTGTATAGACAATAAAACAATTGAAGTTAAGAAGACTAAAGTAGCTGTTAAAAGAAAACCGAAGGAAGATGATAATGTTATTATATCTGTGAAAAGACAGAAGAAGAAAAAGCAACCATATGTAAAACCTACGATCCCAATTGACGAGAACATTTTCAACGTGAAAACTTTGGACCACGAGGAGTTGAAACGAGAACTCCTGGCCAGACGGAATTGTGAGAAGTATACTCAGGCGCGTTACAAGTGTAACGTCTGTTATAGATGGTTCCCGACCAAGGATAAGCAACGAAGACATATGATCAAGCATAGCGAGcaAAGTGGTCCCATAAAGTGTAACATATGTAATTTCCGTATGAAGAAAAGTAGGGATTTGCGCGCGCATATGAAAGGACAACACACATCGGAATTTATATGCAAACTGTGCCCGCTGGTCACAAGGAATAGAAACGTCGCATTAGGACATATGAAGTACCACGCCGGCAACAAGTATAAGTGTCCGCAGTGTTCCTTTGAGTTCGAGAAACCAACCACGTTACTGAACCACCTACGTCTGAAGCACATGTCTGCGTATGTCTGCGATCTATGTGGCTACACGTTTGTCAGTCAAACTGGCGTCAAAGTCCACAAAAGAATGAAACACAAgctttttgataaaaatACTAAATTCAAAGGGCCGCACTGTGATAACTGCGACGTCAAGTTCTTAACTAAGAAAGCATACGACAGACATCTGCGGTTGTCATCTAAACATATCAAGGAGGATGACCCTAACCGCATGAGCAATGACCCATCTATAAAGCAGCGGCGACTCGGTGCATCTTGGGGTACCCCCGTCAGACGACCGGTCATACATCGTAGAGACGAGAATAGTATGCAACCACATAATGGACCCGTGACCTGTGAACAGTGTGGCGTGCTACTAGAAAGTCTCCGGGTATACGCCTCCCACTTCAGGTACGCTCACCCGGGCATCAACCGGACACAGTTCACGGCCGTGTCCACACCTTACATGTGTGAACATTGCGGGAAGTTCTTTGTGGGTCCTGCAGCCGACGAACCTGCGACGGAACACCACCGAGCAGCAGCCGAGTGCATGTCCAACGGCGGCTTCAgtcgcgggcggcgacgcgaggCAGGCGGAGCGACGCGAGGCGGCGGCGCAACAAAGCGCACGAGGGGGGGCGCgcgggtggcgcgaggaggcacggGCGCGTGCCGCGCAGTGCGTGTTCACACCGCGCGGCGACGGCGCAGACTTCGGTCACTTCCGGTGGTGCAGCGGCTTCGGTCGAGGGCAGCGCCGCGTGGCTCAAAGCGGCGCGGCGCGCAGCATCGGCGAGGCGTGCGGGAGGCTGGAGGGGGCGCGTGCACCGCGCGGCGCGCGGGCACGCCGCGCGGCGCAGCGCAGCTGTCCGTCCAGTTGGAGGGTCCGGGGGGGCCGGGCTTCGGTCGCAGGGGCGGCCGAGGCTCCGGCGGCAAGTCCTGTGAAGCTGCTGTTCGTGGactcggcaccccggcggtcaagCCACCGCCAGCCCAGCTCGGGCCAGCTTCGGGGGGTCGTCTCCGCTCGCGCTCCGCACGGGCGGCGCAGGGACGCGCGGCCACTGTggggggcgcgggcgggcgggggcgcgggggctggggtgcgcgggcgcgtacgagcgcggtcggcgcatcgcacgggcggcgcgggtggcACGCGGGCAGCGCAACGGTGCGCGCAGTCGGCGCAGCGGAGCGCTCGGTACGGGGACACGCGCGGGACGAGCTGCGGCGCTCAGTCCGTTTCGCGCGCGATGAAGCGGACGGCGCCGGGTGCCGGCTCCGCGACGGCGTGGAcgcaacgcgcgcaggcgccgATGTCGTCAGCGGGCCGGCGGGTGCAGCTGGTCTCGGCGTCTCCCCTCATCTTCGTCCCATTGGGGACACTCCATTTCTGGGGCGCGTTGCGCCGGGCGGCGCGCTGTCGGTGACCGGCAGCAGCGTCATCCGGCGCAGCAGGTCAGTCCTCTTCAGGCCCGGCGCGCGCTGCTCGGGAGCGGCGCGCGCCGGGCTACAGCATCAGAACACAACCACTCTAGCAGGCCACATGTGGGTCCACACGGGTCAGAAGTGGTTCCAATGCGACCACTGCAACAAAACGTTCAGTATGAAAGCCAACCTCGCGGGCCACATGCGCCAGCACGCGCCCGGACGACGCATGTACGGCTGCGGCGTGTGCGGCAAAAACTTCACTATGGAAACCAACCTCGCGGGCCACATGCGACGCACGTACGACTGCGGCGTGTGCGGCAAACAATTCACATTTAGCTATAACCTCACCAGGCACAAGTTTCTCCACACGGGCCTGCGACCGTTCAAATGCGATGCCTGTGAAAAGCCATTCCGGACATCTGGCGAACTGCGCTCCCACGTAGACTACGTGCATCTTAAGAAGCCGCGACCGAAGCGCGTGCGCAGGAAAGGGAAGAAGTGTGAAATGTCTCCTGCTGATGCGATGTTTTGTTAG
Protein Sequence: MYRLQDYGLDKMYQDIMGKAPSSDTNNRLPMGVCWECTARLQAAASFRSKALFSDALLQDHLKNNTDEVFKFNSNNKEEHAPNTLIKTEVIGIPHNEEIEVELQNLVRNKITIKDEGRNEIIEETYHSADVKTEIDLIPITEIEIGEKETDLEEDDDNDIVSESIYINDAKVGFDKVVLLKNEEQIETLKLSNSICDSNDENELTNPSKSFDSPDEDHVAVVDDVITVCDGDDDRTYVNDDIITPVANEAVVCIDNKTIEVKKTKVAVKRKPKEDDNVIISVKRQKKKKQPYVKPTIPIDENIFNVKTLDHEELKRELLARRNCEKYTQARYKCNVCYRWFPTKDKQRRHMIKHSEQSGPIKCNICNFRMKKSRDLRAHMKGQHTSEFICKLCPLVTRNRNVALGHMKYHAGNKYKCPQCSFEFEKPTTLLNHLRLKHMSAYVCDLCGYTFVSQTGVKVHKRMKHKLFDKNTKFKGPHCDNCDVKFLTKKAYDRHLRLSSKHIKEDDPNRMSNDPSIKQRRLGASWGTPVRRPVIHRRDENSMQPHNGPVTCEQCGVLLESLRVYASHFRYAHPGINRTQFTAVSTPYMCEHCGKFFVGPAADEPATEHHRAAAECMSNGGFSRGRRREAGGATRGGGATKRTRGGARVARGGTGACRAVRVHTARRRRRLRSLPVVQRLRSRAAPRGSKRRGAQHRRGVREAGGGACTARRAGTPRGAAQLSVQLEGPGGPGFGRRGGRGSGGKSCEAAVRGLGTPAVKPPPAQLGPASGGRLRSRSARAAQGRAATVGGAGGRGRGGWGARARTSAVGASHGRRGWHAGSATVRAVGAAERSVRGHARDELRRSVRFARDEADGAGCRLRDGVDATRAGADVVSGPAGAAGLGVSPHLRPIGDTPFLGRVAPGGALSVTGSSVIRRSRSVLFRPGARCSGAARAGLQHQNTTTLAGHMWVHTGQKWFQCDHCNKTFSMKANLAGHMRQHAPGRRMYGCGVCGKNFTMETNLAGHMRRTYDCGVCGKQFTFSYNLTRHKFLHTGLRPFKCDACEKPFRTSGELRSHVDYVHLKKPRPKRVRRKGKKCEMSPADAMFC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -