Pfla042368.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465201.1:7545853-7550062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.096 12 8.0 1.4 1 23 28 50 28 50 0.90 2 12 0.021 2.6 10.0 0.4 2 23 78 100 77 100 0.93 3 12 0.17 21 7.2 2.3 1 23 164 186 164 186 0.98 4 12 0.0046 0.58 12.1 0.4 2 23 214 236 213 236 0.95 5 12 3.1e-05 0.0039 19.0 0.9 3 23 261 281 259 281 0.97 6 12 0.084 11 8.2 0.5 2 23 286 307 286 307 0.95 7 12 3e-06 0.00038 22.1 1.2 1 23 312 335 312 335 0.97 8 12 0.21 26 6.9 3.3 2 23 345 367 344 367 0.90 9 12 0.00066 0.083 14.8 1.0 1 23 373 396 373 396 0.97 10 12 0.0041 0.52 12.3 3.4 2 23 401 422 400 422 0.96 11 12 5e-06 0.00062 21.5 3.9 1 23 428 450 428 450 0.98 12 12 6.6e-05 0.0083 17.9 0.9 1 23 459 482 459 482 0.96
Sequence Information
- Coding Sequence
- ATGACTATATCAGAAAGACAAAACGCAGCCACGTTCTTAGAATATACCACAATCAAGCCTTTCTTTTACCAACAAGCGAATTTCAAATGCTTTTACTGCAACGAAGTCTTTCCAGAAATACATTCCGTGTTACAGCATACTGCATTCCACGTAACTCCAGAAAGAAGTTGTTTACTAAAACAGTATCTAAGAAAAGGGAAGAGAGTCATTAAAGTAGATATTTCAAGTCTCAAATGCAGGCTATGTGAACAAAAGTATTCGGATCTTGATGATATTAGAAAGCATTTAACGCTTGCACATAAGAAAGAGTTCAATTCAGCAGGAAATGGACTAATGGCGTATGACTTAAACACGAATAACAGAACCGAAGTGAAGCGACGACAAGGAGCACTGACCAGTATCTGGGAACTGACACTTTCAGAACGACAGAATGCCTCGTTGCTTTTAGAAAACACCACAGCAACACCTTTCGTGTACTGCAGATATTATTTCAAATGCTTCTTCTGCAGAGAACAGTATTCGGAGATAAAAACACTTCTACAACATACGCTGACACATGAGACACCAGATAATGCTACCATCCTTAAAGAATACCTCTCGAAAGGGAAACGGACTGTTAAAGTAGACATTTCAGATTTAAAATGCAGAGTATGTGATCAAAATTACAAGGACCTCGATGAAATACGAAAGCATCTGACCGTATACCATAAAATGTCTTTCACGGAATCAGGAAACGGACTGGTAGCTTACGATCTATCTTCCAAAAATGGCCAAATCGCCTGCCATATTTGCAACAAGATCTTCCAGACTTTTATACTTCTAAACAGGCATATGAATGTACATTTTAGTAATGCGGTTTGTGAAACATGTGGGGCTGGTTTCATGACTCATCAGCGGTTAATACAGCACAAAGAAATCCACCTACCAGGAGGGTATCCTTGCAAAAGATGTACCAAAGTATACACAACGAATTCTAACTTAAAATATCATATAGAAAAAGCTCACGAAGGAACGACgaagatgagaatgttaagatgTCCACATTGTCCCGAAAGATTCACTGAACACTTTCGGAAGTTGAAGCATTTGAAAGAAGCACACGGGATTACCTTTACATTTGAATGTGAAGTATGTCATTCGGTGTTCCCGAGCCGCAGAGCATTGACAATGCACACAAATAAGTTGCATACGGTGAAAACTCAGTGCGAAGTTTGCAAAAAGAGTTTTAGCTGTATTACTTCTTTAAAGAAACACATGGTTTCACACACAGGAGAAAGGAATTTCATTTGTTCTCTTTGTCAGAAAGCTTACAGACATCAGAAGAGTTTGAAGCTGCATATGAGGACGCATCTTCAGGGCGAACAATATATTAAATTCAATTGCTCGGTTTGTGGGCACGGGTTCCCCAATAGAAACGACTATAATAGACACATAAAGGAATGGCACCCAAGGACTCTTTTCGATTATTCTGGTCAATAA
- Protein Sequence
- MTISERQNAATFLEYTTIKPFFYQQANFKCFYCNEVFPEIHSVLQHTAFHVTPERSCLLKQYLRKGKRVIKVDISSLKCRLCEQKYSDLDDIRKHLTLAHKKEFNSAGNGLMAYDLNTNNRTEVKRRQGALTSIWELTLSERQNASLLLENTTATPFVYCRYYFKCFFCREQYSEIKTLLQHTLTHETPDNATILKEYLSKGKRTVKVDISDLKCRVCDQNYKDLDEIRKHLTVYHKMSFTESGNGLVAYDLSSKNGQIACHICNKIFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLIQHKEIHLPGGYPCKRCTKVYTTNSNLKYHIEKAHEGTTKMRMLRCPHCPERFTEHFRKLKHLKEAHGITFTFECEVCHSVFPSRRALTMHTNKLHTVKTQCEVCKKSFSCITSLKKHMVSHTGERNFICSLCQKAYRHQKSLKLHMRTHLQGEQYIKFNCSVCGHGFPNRNDYNRHIKEWHPRTLFDYSGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -