Basic Information

Insect: Polymixis flavicincta
Gene Symbol: ZFP42
Assembly: GCA_949987655.1
Location: OX465191.1:13725860-13740779[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00026 0.033 16.1 0.9 1 22 53 74 53 74 0.96

2 12 8.1e-06 0.001 20.8 3.2 1 23 90 113 90 113 0.98

3 12 0.02 2.5 10.1 0.7 2 23 121 143 120 143 0.95

4 12 1.2e-05 0.0015 20.3 1.9 1 20 148 167 148 169 0.95

5 12 6.2e-07 7.8e-05 24.3 0.4 1 23 180 203 180 203 0.97

6 12 0.018 2.2 10.3 3.1 1 23 239 261 239 261 0.98

7 12 0.062 7.8 8.6 0.1 1 23 266 288 266 288 0.96

8 12 1.8e-05 0.0022 19.7 1.0 1 23 294 316 294 316 0.98

9 12 0.00014 0.018 16.9 0.3 3 23 321 341 320 341 0.98

10 12 0.44 55 5.9 0.1 8 23 359 374 349 374 0.92

11 12 2.4e-05 0.0031 19.3 1.4 1 23 380 402 380 402 0.98

12 12 0.72 90 5.2 0.7 3 23 410 432 409 433 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00026	0.033	16.1	0.9	1	22	53	74	53	74	0.96
2	12	8.1e-06	0.001	20.8	3.2	1	23	90	113	90	113	0.98
3	12	0.02	2.5	10.1	0.7	2	23	121	143	120	143	0.95
4	12	1.2e-05	0.0015	20.3	1.9	1	20	148	167	148	169	0.95
5	12	6.2e-07	7.8e-05	24.3	0.4	1	23	180	203	180	203	0.97
6	12	0.018	2.2	10.3	3.1	1	23	239	261	239	261	0.98
7	12	0.062	7.8	8.6	0.1	1	23	266	288	266	288	0.96
8	12	1.8e-05	0.0022	19.7	1.0	1	23	294	316	294	316	0.98
9	12	0.00014	0.018	16.9	0.3	3	23	321	341	320	341	0.98
10	12	0.44	55	5.9	0.1	8	23	359	374	349	374	0.92
11	12	2.4e-05	0.0031	19.3	1.4	1	23	380	402	380	402	0.98
12	12	0.72	90	5.2	0.7	3	23	410	432	409	433	0.81

Sequence Information

Coding Sequence: atgccACCCAAACGAAAGAAGTTAGGGCGACCGCCTGGGTCCAAAATGAAGAAGAGGAAAATCAAAACTTCTAACATAAACCTTGTGGAAAACAATTCTTGTTCAGTTGTGGTACCGAAGAAGGAAAAAGAAATATCTTCTCAAAGCCATGTTGAATACGTCTGTAATGTTTGCAATAAGAATTTCAAAACAGGAAAGGAGTTGTTAGTGCATCATAGACGTTGTCGCGCAATAGAATACAATGAAAAGGTTTTCTCGAAGGCTGCATATACTTGTCAAGAATGTCCCAAAAAGTTCAGGTTTAAGAAAAGCTTCACAGAGCATCTCCGGACAGAACACTCCAAGCTACCTGACAGTGTTTCTTGTGATCAGTGCAGTGTCCGTTGTCCAGATAAGAAGACTTTGATTGATCACATCAAAAATGTTCATGAGAGAGACATTTTTTCCTGTCCACACTGCAAGCGAACTTTTGTTCGCCGCTCACATGTGCTTCGGCATATGGCGCAGAGTGGATGTGACGGACTAGGAATTGCCTCATATTCTTGTGAAATTTGCAATGCAAAATTTTCTAGAAAGGACAATTTAATGGTCCACATTAGGTTGCAACATATTATAAAGAATGCTTTCTATTGCAAGTGCTGTCTATACTCTACAAAGAACTTTTCTAAATTGGTTAACCATTGGCACAAACAACATGCAGCCACCCCAGATCAATATCAGTGTCACCACTGTAGCAAGTGGACCAGCTCTCGAGCCGCCATGACCAAACACCTTGAAATACACGGCGAGAAGAAGTTTGCATGTGATGTGTGCGGCTACAGCACTTTCACGATCGAGGTGATGCGTCGCCACGCGCTCACGCACGTGGAGGACAAGCCATACAAGTGCGCATTGTGCAGCAAGTCGTACATCCAGCGCGTGCAGCTGCAGCGCCACCTCGAGAAACATACCGGTAACCTGTGCAACAAGTGTGGTGAGACCTTCTCCGGAAGAGCCAGGTTGCTGATTCACATGAGAGAACATATGGGATTAGAGAAGTTATTTTGTCCCCTGACAACATGTGCATACTCAACAAAAGAATTCATCAGTGAAGCCAGTTTGAATAATCATTTGAAAGTGCATTTAGAAGATAAGCCGTACAGTTGCGAGGTGTGCGCCAAGACGTTCCACTCGGAGGTGAACCTGCGGCGCCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCATCCGGCACGTGCGCAAGCACCACCCCACCGTCTTCCAGGGACACCTGCAGCACGTGCGCTCCGTACTCGGGTCAAATAATTCAATGGAAAGAGTGAAGAAGTCTGAAATAGAATCAATACTGAACCTGTTAGATGTGGAGTCGGATCGTATTCTGCAAGGCTATAGCGGGGCAGGCGTGCTCTACGGCGGCATGCAAGACGACCAGAGCAGTTCCAGTAGCGAAGTCCAGAATAAGAAAGGAAATTTGGCCCTAATGTCAGAGGACGAGCTCACAGAGAATTTGAAAATGTTACTATCACATCTTATTGATGAGGAGACACTCGATTTGTTTGGTTGGCCTGATGAGAGCGTAGACGTGATATTAGAAAAAGTCATCGAGCAGTGTGGTGCGAAACCCGCGGACCGCGAGAAATGGACGCGAGTGCAGCGCCTGCGCGAAAACTCCAAGCATTTGTTCTTATACGTGATCGAAGACAAGAACATCGCGCGCATGCTCGATACACACACTATAGATCAAATCGTCAAACACATTCTCAAACAAGTCTGCCCAGATGACGCCAAGGAAAGTATCTAG
Protein Sequence: MPPKRKKLGRPPGSKMKKRKIKTSNINLVENNSCSVVVPKKEKEISSQSHVEYVCNVCNKNFKTGKELLVHHRRCRAIEYNEKVFSKAAYTCQECPKKFRFKKSFTEHLRTEHSKLPDSVSCDQCSVRCPDKKTLIDHIKNVHERDIFSCPHCKRTFVRRSHVLRHMAQSGCDGLGIASYSCEICNAKFSRKDNLMVHIRLQHIIKNAFYCKCCLYSTKNFSKLVNHWHKQHAATPDQYQCHHCSKWTSSRAAMTKHLEIHGEKKFACDVCGYSTFTIEVMRRHALTHVEDKPYKCALCSKSYIQRVQLQRHLEKHTGNLCNKCGETFSGRARLLIHMREHMGLEKLFCPLTTCAYSTKEFISEASLNNHLKVHLEDKPYSCEVCAKTFHSEVNLRRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKHHPTVFQGHLQHVRSVLGSNNSMERVKKSEIESILNLLDVESDRILQGYSGAGVLYGGMQDDQSSSSSEVQNKKGNLALMSEDELTENLKMLLSHLIDEETLDLFGWPDESVDVILEKVIEQCGAKPADREKWTRVQRLRENSKHLFLYVIEDKNIARMLDTHTIDQIVKHILKQVCPDDAKESI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026611;
90% Identity: iTF_01192982;
80% Identity: -