Pfla042287.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465201.1:6731692-6742979[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.045 5.7 9.0 0.4 3 22 2 21 1 23 0.89 2 24 0.22 28 6.8 1.0 3 23 96 117 94 117 0.93 3 24 0.00064 0.08 14.8 1.7 3 23 123 144 122 144 0.96 4 24 6.3e-05 0.0079 18.0 2.0 2 23 148 170 147 170 0.93 5 24 0.14 18 7.4 0.1 2 23 176 198 175 198 0.93 6 24 0.0076 0.96 11.4 1.1 2 23 206 228 205 228 0.94 7 24 0.081 10 8.2 5.7 2 23 235 256 234 256 0.93 8 24 0.16 20 7.3 2.1 2 23 401 423 400 423 0.93 9 24 0.0006 0.075 14.9 0.4 1 23 429 452 429 452 0.94 10 24 0.00066 0.084 14.8 2.5 2 19 459 476 458 481 0.89 11 24 0.00071 0.089 14.7 0.4 2 23 487 509 486 509 0.92 12 24 0.0015 0.18 13.7 1.0 1 23 516 539 516 539 0.96 13 24 0.0025 0.32 12.9 0.3 3 23 547 567 546 567 0.94 14 24 9.1e-06 0.0011 20.6 0.6 1 23 573 595 573 595 0.98 15 24 0.00095 0.12 14.3 0.0 1 20 601 620 601 622 0.95 16 24 0.0076 0.96 11.4 1.1 2 23 643 665 642 665 0.94 17 24 0.16 20 7.3 2.1 2 23 804 826 803 826 0.93 18 24 0.0006 0.075 14.9 0.4 1 23 832 855 832 855 0.94 19 24 0.00066 0.084 14.8 2.5 2 19 862 879 861 884 0.89 20 24 0.00071 0.089 14.7 0.4 2 23 890 912 889 912 0.92 21 24 0.0015 0.18 13.7 1.0 1 23 919 942 919 942 0.96 22 24 0.0025 0.32 12.9 0.3 3 23 950 970 949 970 0.94 23 24 9.1e-06 0.0011 20.6 0.6 1 23 976 998 976 998 0.98 24 24 0.00011 0.014 17.2 1.2 1 23 1004 1026 1004 1027 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTCTACTGTAAGTCTGTGTTCATACAAAGCGCAGAGCTCAAAGAACACACGGATTTTGAACATAGAGCCATCAATACCCGGGATGTCATTGTAAGGACGCTGTACACAGGGGGCAGAGCAAAGCTTGACATCTCAAATCTTTGGTGCACCAGCTGCGCAAGTCAATACGATGACTTCCAAGAATATTTGGAGCATCTATCAGAAGGTCATGGCTTCAGTATAGATAAAGATGCCTCCCAATCCTTCGACTGCTTCCATTTGGCAGACAATGGAATGTTCTGCTTGGAATGCGGACAATTCTTTCGCTTCTTTGGACCTTTACTAAAACATACGTACAAGTATCATATCCAACAGATTCTGTGCGAGATATGCGGACAAGGATTCTCTGAAAAACATAACTTGCACAATCATGTTAAACTAATTCATGGGATTAAGTCTTGTAAGCATTGCGAAGAGACTTTCCGCACACAGTATGCTCTAAAGAATCACATCGACAATGTCCATAGGACTGACAGGCTACAATGTCCGTTATGCCCACAGATACTCGGTAATAGATACTTAAAGAAACGCCACATGGCGTTAGTCCATGATTGCAAAAGCGCGCAGTTAGTCTGCGAATTCTGTTCCAAGATTTTCACTAGGAATAATAAGTATGTCCAGCATAAGTTAAGAGTACATGAAAAGGAGAAAAATTGTACGTGTGAAGTTTGTGGCCATAAGACTTTTAACGAGGATTGTCTGAAGAAACATATGGTGGTACATTATGACGGGCGGCCTTTCAAATGCGAAATCTGCGATGAAGATGAAGAGGCAAGACTCgctgaaaagaaaagaaaagacgAACTCACAAGATTTATCACCATCATCTTAGAAAACTCTACGATTATCCCGTTCAGATGGGCAGCTAACAAGTTCATGTGTTTCTATTGCTGTCACACCTTCGTAGATTGCTCAAAACTCAAAGAACACACTTCTGAAGAACATCAAGGAGCAAATCTAAAGAATGTTCTCAGAAGCTTGGTCGCAAGTAGTCGCATAAAACTCGACACTTCGCAAATCGTCTGCTCAGAATGCGGACTACAGTTCCTTATTTTCGAAGAATTCGTGGACCATTTAGCAGCAACCCACGGGTTTAAATTTAACGAAGAAATAGCCAAATCTCTGTTTACTTTTCGTCTGTCTGACGATGTATTGATCTGTCAAGATTGTAGCCAGGAGTTCAGATTCTTTGGTACGCTATTGAAGCATGCTCACAAATTCCACAATAAGTATAAAACATTCCTGTGTGAGGTGTGTGGACAAAGTTTCGTTGCTCATGCGAATATGATCAGTCATATGAGGAATATGCACACTTTTGCTCAAGGCCTTAAATGTCGAAACTGTGACAAAGTATTCCGTAACTCTTATTCCTTACAAATACACTGTGAAAGAGTCCACAGAACTGATATGCTGAAATGCCCGAAGTGTCCAGAGGTTTTCTCGTCACAATACTTTAAGAAACGACATTTAGCGCTCGTTCATGACGTCAAAAAACTTCAGTTCAAATGTGACGAATGCGAGCTGGTGTTCACAATGAAGAGTCGACTCGTGCAGCATAAGTTGAGGACTCATTTAAAACAGAAAACTGTCGCCTGCGAGGTGTGTGGCTTCAAAGTCTTTAACAACGAACTTTTGAAACGCCACATGGTTCGCCACGATAACACGAGACCTTTCGAGTGCCAAATTTGCGAAAAGGCGTTCCAGAGAAAGAAGACTTTGGATATTCATATGAGGATACATACGAATGATAAGAGATATGTTTGTAAGGAGTGTGAGAGGGCTTTCGTTCAGATGACGAGTTTGAAGTTGCATATACTCGGTAATAGATACTTAAAGAAACGCCACATGGCGTTAGTCCATGATTGCAAAAGCGCGCAGTTAGTCTGCGAATTCTGTTCCAAGATTTTCACTAGGAATAATAAGTATGTCCAGCATAAGTTAAGAGTACATGAAAAGGAGAAAAATTATGAAGATGAAGAGGCAAGACTCgctgaaaagaaaagaaaagacgAACTCACAAGATTTATCACCATCATCTTAGAAAACTCTACGATTATCCCGTTCAGATGGGCAGCTAACAAGTTCATGTGTTTCTATTGCTGTCACACCTTCGTAGATTGCTCAAAACTCAAAGAACACACTTCTGAAGAACATCAAGGAGCAAATCTAAAGAATGTTCTCAGAAGCTTGGTCGCAAGTAGTCGCATAAAACTCGACACTTCGCAAATCGTCTGCTCAGAATGCGGACTACAGTTTCTTATTTTCGAAGAATTCGTGGACCATTTAGCAGCAACACACGGGTTTAAATTTGACGAAGAAATAGCCAAATCTCTGTTTACTTTTCGTCTGTCTGACGATGTATTGATCTGTCAAGATTGTAGCCAGGAGTTCAGATTCTTTGGTACGCTATTGAAGCATGCACACAAATTCCACAATAAGTATAAAACATTCCTGTGTGAGGTGTGTGGACAAAGTTTCGTTGCTCATGCGAATATGATCAGTCATATGAGGAATATGCACACTTTTGCTCAAGGCCTTAAATGTCGAAATTGTGACAAAGTATTCCGTAACTCTTATTCCTTACAAATACACTGTGAAAGAGTCCACAGAACTGATATGCTGAAATGCCCGAAGTGTCCAGAAGTTTTCTCGTCACAATACTTTAAGAAACGGCATTTAGCGCTCGTTCATGACGTCAAAAAACTTCAGTTCAAATGTGACGAATGCGAGCTGGTGTTTACAATGAAGAGTCGACTCGTGCAGCATAAGTTGAGGACTCATTTAAAACAGAAAACTGTCGCCTGCGAGGTGTGTGGCTTCAAAGTCTTTAACAACGAACTTTTGAAACGCCACATGGTTCGCCACGATAACACGAGACCTTTCGAGTGCCAAATTTGCGAAAAGGCGTTCCAGAGAAAGAAGACTTTGGATATTCATATGAGGATACATACGAATGATAAGCGATATGTTTGTAAGGAGTGTGAGAGGGCTTTCGTTCAGATGACGAGTTTGAAGTTGCATGTGAGGTTACATCACGGAGGAGCCGATGGGGCCAGAGGGGCCGGACGGGCCGAAGGGGCCTCTTGGCATTAA
- Protein Sequence
- MCFYCKSVFIQSAELKEHTDFEHRAINTRDVIVRTLYTGGRAKLDISNLWCTSCASQYDDFQEYLEHLSEGHGFSIDKDASQSFDCFHLADNGMFCLECGQFFRFFGPLLKHTYKYHIQQILCEICGQGFSEKHNLHNHVKLIHGIKSCKHCEETFRTQYALKNHIDNVHRTDRLQCPLCPQILGNRYLKKRHMALVHDCKSAQLVCEFCSKIFTRNNKYVQHKLRVHEKEKNCTCEVCGHKTFNEDCLKKHMVVHYDGRPFKCEICDEDEEARLAEKKRKDELTRFITIILENSTIIPFRWAANKFMCFYCCHTFVDCSKLKEHTSEEHQGANLKNVLRSLVASSRIKLDTSQIVCSECGLQFLIFEEFVDHLAATHGFKFNEEIAKSLFTFRLSDDVLICQDCSQEFRFFGTLLKHAHKFHNKYKTFLCEVCGQSFVAHANMISHMRNMHTFAQGLKCRNCDKVFRNSYSLQIHCERVHRTDMLKCPKCPEVFSSQYFKKRHLALVHDVKKLQFKCDECELVFTMKSRLVQHKLRTHLKQKTVACEVCGFKVFNNELLKRHMVRHDNTRPFECQICEKAFQRKKTLDIHMRIHTNDKRYVCKECERAFVQMTSLKLHILGNRYLKKRHMALVHDCKSAQLVCEFCSKIFTRNNKYVQHKLRVHEKEKNYEDEEARLAEKKRKDELTRFITIILENSTIIPFRWAANKFMCFYCCHTFVDCSKLKEHTSEEHQGANLKNVLRSLVASSRIKLDTSQIVCSECGLQFLIFEEFVDHLAATHGFKFDEEIAKSLFTFRLSDDVLICQDCSQEFRFFGTLLKHAHKFHNKYKTFLCEVCGQSFVAHANMISHMRNMHTFAQGLKCRNCDKVFRNSYSLQIHCERVHRTDMLKCPKCPEVFSSQYFKKRHLALVHDVKKLQFKCDECELVFTMKSRLVQHKLRTHLKQKTVACEVCGFKVFNNELLKRHMVRHDNTRPFECQICEKAFQRKKTLDIHMRIHTNDKRYVCKECERAFVQMTSLKLHVRLHHGGADGARGAGRAEGASWH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -