Pfla042291.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465201.1:6756462-6764741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0025 0.31 13.0 0.0 1 23 76 99 76 99 0.92 2 24 3.2e-05 0.0041 18.9 0.9 1 23 104 127 104 127 0.95 3 24 0.001 0.13 14.1 0.1 1 23 133 156 133 156 0.95 4 24 7.9e-05 0.01 17.7 1.1 2 23 162 184 161 184 0.97 5 24 0.00014 0.018 16.9 3.5 1 23 221 243 221 243 0.98 6 24 0.0088 1.1 11.2 0.1 2 23 271 293 270 293 0.94 7 24 0.0072 0.91 11.5 0.6 1 23 313 336 313 336 0.94 8 24 3.7e-05 0.0047 18.7 0.5 1 23 341 364 341 364 0.96 9 24 0.0059 0.74 11.8 1.0 1 23 369 392 369 392 0.96 10 24 0.00033 0.042 15.7 0.9 3 23 396 417 395 417 0.96 11 24 0.011 1.4 10.9 1.4 2 21 425 444 424 445 0.94 12 24 0.005 0.63 12.0 4.0 1 23 500 523 500 523 0.94 13 24 0.86 1.1e+02 5.0 0.0 2 23 596 619 595 619 0.94 14 24 1.8e-05 0.0022 19.7 0.1 3 23 626 647 625 647 0.94 15 24 0.065 8.2 8.5 0.2 1 21 694 714 694 717 0.89 16 24 0.019 2.4 10.2 0.3 3 23 749 770 747 770 0.94 17 24 0.012 1.5 10.8 2.3 2 23 793 814 793 815 0.95 18 24 0.00095 0.12 14.3 1.7 1 23 820 843 820 843 0.97 19 24 0.058 7.2 8.7 0.2 1 23 848 871 848 871 0.93 20 24 0.0019 0.23 13.4 0.7 2 23 877 899 876 899 0.93 21 24 0.0013 0.16 13.9 0.2 2 23 907 929 906 929 0.97 22 24 0.2 25 7.0 0.0 2 23 936 957 935 957 0.95 23 24 4.1e-06 0.00052 21.7 0.6 1 23 963 985 963 985 0.92 24 24 4.5e-06 0.00057 21.6 1.2 1 23 991 1014 991 1014 0.97
Sequence Information
- Coding Sequence
- ATGGAACACCCGCACTGCGATATAACCTTTAAGTCTATGAGGTTAAGGAACAGATATGACGGGGTCCAAATCAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCAACTTGGAGGATTTGAACGATTCGATAGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGCAATTTGCAGCCGTTCAAACTGATTAAAGACAACTACCCATGCCCTATTTGCGGAGAAATCTTCAGATATTTTGGCGTCTTACTCAAGCACGTTAGTGCATCTCATAGTGGCAACAAACATATTTGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCGAATCTTAGAGCTCATATTTCGAGGCGTCACAAAATCACTGATAATTACAAGTGCGGTAGTTGCGATCTAGTTTTTGGGAGTAATGGCGCGTTAAGAAATCATCAAGGCAGCGTTCATGGTACAAAATCAGTGCAATGCTTTGAATGTTCAGAAACATTCACCTCAAAATATTCAATGCAACGACATTTGATCACGTATCACGATGGTCTGCCAGGGCCTTACGAAGGCTGTACCTCTGAGCGCCGACGGAAAAACTTGCAAATACTGTTCAACCACACTACAATTATGCCATTCAAATGGCGCGGTAAATACGTTTGCTTCTACTGCGGTAAAAACTTTACCGAATACACAGAATTTAGAAAGCATACGAAATCACACGGACTGTGCACCACTAAAGATTATTCACTAAAACTAATCAGAGGAAGAAATATCGAAATTAAAGTTGACGTCTCAGAAATCAGTTGTGATATCTGCAATGAGTCTTTCAACAGATTCGAAGAAATAATCGAGCATTTGATCAGCAAACACAATATggaatacaacaaaaatatcgatataCCCTTCCAGGAATATCGATTAGTCGATTTTCGATGTTTGTACTGCGAAGAACAGTTTTCTTATTTCGGATACCTGGTTAAACATGTTAATGACGTTCATCCGCAGAACTGTTTTATTTGTGACGATTGTGGAGTTACTTTTAATAAGAAGAGGGACTTGTCTATACATTTAAGGAATTATCACAGACAGGGCGGCTACCCCTGCGATTTGTGCTTGAAGAACTTCGAAACTCGTCTCATGTTGCGGagacataaaaataacatgCATTTTAGGCACTGTAAGAGCTGTGGTTTGCGTTTCGCGTCACTTTCTCTTTTACAAAAACATATACTAGTTGATCACCCCGAAAGAGAGAGCAATATGAAGTGTAGCTACTGCTCCAAAGAGTTCCACACTTCTTTAGGGTTAAAGCAACATATAAGCAAATGTAAGGTCAAAACCATATCCCAGGTCGAACTGCCCCACACTTCTTTTCTAAACGACAACAACATAGAACCTAAGAAAAAGCAAAACATATTACAAATAAGACTGAATATACAATGCGTACTCAACATGTCGACAGCGGTGCCATTCAAATTCTTTTCCAAGTACTCCTGCTTCTATTGCTCAAAAAAATTCTCAGAATTTGACGAGTTACGTCACCACACTAGTCTTGAACATCCTGTTTGCGATTTGAAATCCAAATGCATGAAGAAATGCAAAGGCGAACGGATAGCAGTTAAAATTGACATATCTTCACTAGCTTGTAAAGTATGTTGCATCCCTATGCCTAATTTTGAAGATTTAATCAACCATTTAATAAGCGAACACAAGGCGAACTATGATACTTCAATTCCCGGGTGCTTAGAGCCTTTCCGGGTTATAAAAGACAACATGCCATGTCCTATATGCCCGGATACAGTCTTTCGATACTTCGGTATTTTACTCCGACATATGAACTCCGAACACAGTAACAACAATCGAATCTGTGACTTCTGCGGTCGAAGCTTCAGAAACGCGGCGAATCTAAACGTGCATATAACTTACGCACACACAGGTTCAAAATTCAATACTGTGGAGGACAAATATAAGAAAATGGAAGTCGCTCGTAAGCTATTGATAAAACGGCGGAATGTCGAATATGTTTTACAGTATAGCAACGTCACACCTTTCATGTGGCACAAAGGGAAATATAAATGCTTTTACTGCAACGAAACAACTAAAGACCCAGTCGTTCTTCGAGGACATACAGTAGAAGCTCATCAGTTCGCGAATCTAGAACTTGTTGTGTTCGatagaaccaaaaataacaGAAATAAAGACGCCGCTGTCAAAATTGACGTCACTAATATATGCTGCAAGCTTTGTCCTCAAGCAGTTACCAATCTAGAAGAGCTGATCCACCATCTGATCATTGCACATGACGCGGAATACGATGTAAGCGTTCCAAATTGTCTGCTACCATTCAAATTAGACAAGGACCAGCCTACATGCCCGACTTGCAATATGAAATTTGTGTTCTTTGAATATCTGCTGCGGCACGCGAACAAACATCATCTTTCCCACCATTACATCTGCGATGTTTGTGGCACCAGTTTTCAAGGCGAGAATCATTTGAAAATGCATTATAGGTACTATCATAGAGAAGGTGGCTACACTTGCGAATACTGTGGAATCAGTCTTGCAACTCTATCTAAAAAGATTTTACACGAAAAGAATGTCCATTTAGTCAATTTGTCGACTTGTCCGCATTGCCCGGAAACATTCAAAAGTCCTTACTTAAAGAAACTTCATTTGGCGAATGTTCATGAAGTAGAAGAACTGAAAATTAAGTGTCCGTTTTGTCCAAAAGTGTATCCGCAGGAATCTATAATGTCGCGACATATGAGACGAGTGCATCTGAGAGAGAAGAATGTAGAATGCGATGTCTGTGGTGACAAATTTTTCGGTCCGTATGATGTTAAACTCCACATGGTGAAACATAATGGCGAGAAGAAATTCGTTTGTTCGGTTTGCGGGAAGAAATTCTCCAAACGAAGTAATTTGAACTCCCATGCGGTACTACATACGAAAGAGAAGGATTATGTATGTGTGGTTTGCAATAAGGCGTTTGCGCACCAGACGAATTTGAGAATGCACATCCGGAATAGACACAGTCAATTTGACCTAGCTCCAATAGTTGACGAGATTGATGAAAGTGAAATGGTGCAAATGGAAATAATCCAGGAGGAGTTAGAGGGAGAGGTAGCGGGACAATATATTCAATGA
- Protein Sequence
- MEHPHCDITFKSMRLRNRYDGVQIKVDTSSLSCRLCQVNLEDLNDSIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEIFRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKITDNYKCGSCDLVFGSNGALRNHQGSVHGTKSVQCFECSETFTSKYSMQRHLITYHDGLPGPYEGCTSERRRKNLQILFNHTTIMPFKWRGKYVCFYCGKNFTEYTEFRKHTKSHGLCTTKDYSLKLIRGRNIEIKVDVSEISCDICNESFNRFEEIIEHLISKHNMEYNKNIDIPFQEYRLVDFRCLYCEEQFSYFGYLVKHVNDVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHKNNMHFRHCKSCGLRFASLSLLQKHILVDHPERESNMKCSYCSKEFHTSLGLKQHISKCKVKTISQVELPHTSFLNDNNIEPKKKQNILQIRLNIQCVLNMSTAVPFKFFSKYSCFYCSKKFSEFDELRHHTSLEHPVCDLKSKCMKKCKGERIAVKIDISSLACKVCCIPMPNFEDLINHLISEHKANYDTSIPGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSKFNTVEDKYKKMEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPVVLRGHTVEAHQFANLELVVFDRTKNNRNKDAAVKIDVTNICCKLCPQAVTNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHEVEELKIKCPFCPKVYPQESIMSRHMRRVHLREKNVECDVCGDKFFGPYDVKLHMVKHNGEKKFVCSVCGKKFSKRSNLNSHAVLHTKEKDYVCVVCNKAFAHQTNLRMHIRNRHSQFDLAPIVDEIDESEMVQMEIIQEELEGEVAGQYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -