Basic Information

Insect: Polymixis flavicincta
Gene Symbol: -
Assembly: GCA_949987655.1
Location: OX465197.1:14831931-14861299[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 1.8 2.3e+02 4.0 0.2 1 23 209 231 209 231 0.95

2 32 0.0011 0.14 14.1 2.5 1 23 243 265 243 265 0.96

3 32 0.00022 0.028 16.3 0.8 1 23 271 293 271 293 0.98

4 32 4.9e-05 0.0062 18.3 2.8 1 23 300 322 300 322 0.99

5 32 3.8e-06 0.00047 21.8 0.4 1 23 328 350 328 350 0.93

6 32 1.1e-07 1.3e-05 26.7 0.1 1 23 356 378 356 378 0.98

7 32 2.7e-05 0.0034 19.1 1.7 1 23 384 407 384 407 0.95

8 32 0.00016 0.02 16.7 3.1 1 23 413 436 413 436 0.96

9 32 0.00013 0.016 17.0 2.3 2 23 443 464 442 464 0.97

10 32 1.8e-05 0.0023 19.7 1.0 1 23 470 492 470 492 0.97

11 32 0.13 16 7.6 0.0 1 22 498 519 498 519 0.96

12 32 0.13 16 7.6 0.0 1 22 535 556 535 556 0.96

13 32 0.13 16 7.6 0.0 1 22 572 593 572 593 0.96

14 32 0.13 16 7.6 0.0 1 22 609 630 609 630 0.96

15 32 0.13 16 7.6 0.0 1 22 646 667 646 667 0.96

16 32 0.13 16 7.6 0.0 1 22 683 704 683 704 0.96

17 32 0.13 16 7.6 0.0 1 22 720 741 720 741 0.96

18 32 0.13 16 7.6 0.0 1 22 757 778 757 778 0.96

19 32 0.13 16 7.6 0.0 1 22 794 815 794 815 0.96

20 32 0.13 16 7.6 0.0 1 22 831 852 831 852 0.96

21 32 0.13 16 7.6 0.0 1 22 868 889 868 889 0.96

22 32 0.13 16 7.6 0.0 1 22 905 926 905 926 0.96

23 32 0.13 16 7.6 0.0 1 22 942 963 942 963 0.96

24 32 0.13 16 7.6 0.0 1 22 979 1000 979 1000 0.96

25 32 1.3 1.6e+02 4.4 0.1 1 22 1016 1037 1016 1037 0.95

26 32 0.13 16 7.6 0.0 1 22 1053 1074 1053 1074 0.96

27 32 0.13 16 7.6 0.0 1 22 1090 1111 1090 1111 0.96

28 32 0.13 16 7.6 0.0 1 22 1127 1148 1127 1148 0.96

29 32 0.13 16 7.6 0.0 1 22 1164 1185 1164 1185 0.96

30 32 0.13 16 7.6 0.0 1 22 1201 1222 1201 1222 0.96

31 32 0.13 16 7.6 0.0 1 22 1238 1259 1238 1259 0.96

32 32 4.6 5.7e+02 2.7 0.1 1 19 1275 1293 1275 1295 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	1.8	2.3e+02	4.0	0.2	1	23	209	231	209	231	0.95
2	32	0.0011	0.14	14.1	2.5	1	23	243	265	243	265	0.96
3	32	0.00022	0.028	16.3	0.8	1	23	271	293	271	293	0.98
4	32	4.9e-05	0.0062	18.3	2.8	1	23	300	322	300	322	0.99
5	32	3.8e-06	0.00047	21.8	0.4	1	23	328	350	328	350	0.93
6	32	1.1e-07	1.3e-05	26.7	0.1	1	23	356	378	356	378	0.98
7	32	2.7e-05	0.0034	19.1	1.7	1	23	384	407	384	407	0.95
8	32	0.00016	0.02	16.7	3.1	1	23	413	436	413	436	0.96
9	32	0.00013	0.016	17.0	2.3	2	23	443	464	442	464	0.97
10	32	1.8e-05	0.0023	19.7	1.0	1	23	470	492	470	492	0.97
11	32	0.13	16	7.6	0.0	1	22	498	519	498	519	0.96
12	32	0.13	16	7.6	0.0	1	22	535	556	535	556	0.96
13	32	0.13	16	7.6	0.0	1	22	572	593	572	593	0.96
14	32	0.13	16	7.6	0.0	1	22	609	630	609	630	0.96
15	32	0.13	16	7.6	0.0	1	22	646	667	646	667	0.96
16	32	0.13	16	7.6	0.0	1	22	683	704	683	704	0.96
17	32	0.13	16	7.6	0.0	1	22	720	741	720	741	0.96
18	32	0.13	16	7.6	0.0	1	22	757	778	757	778	0.96
19	32	0.13	16	7.6	0.0	1	22	794	815	794	815	0.96
20	32	0.13	16	7.6	0.0	1	22	831	852	831	852	0.96
21	32	0.13	16	7.6	0.0	1	22	868	889	868	889	0.96
22	32	0.13	16	7.6	0.0	1	22	905	926	905	926	0.96
23	32	0.13	16	7.6	0.0	1	22	942	963	942	963	0.96
24	32	0.13	16	7.6	0.0	1	22	979	1000	979	1000	0.96
25	32	1.3	1.6e+02	4.4	0.1	1	22	1016	1037	1016	1037	0.95
26	32	0.13	16	7.6	0.0	1	22	1053	1074	1053	1074	0.96
27	32	0.13	16	7.6	0.0	1	22	1090	1111	1090	1111	0.96
28	32	0.13	16	7.6	0.0	1	22	1127	1148	1127	1148	0.96
29	32	0.13	16	7.6	0.0	1	22	1164	1185	1164	1185	0.96
30	32	0.13	16	7.6	0.0	1	22	1201	1222	1201	1222	0.96
31	32	0.13	16	7.6	0.0	1	22	1238	1259	1238	1259	0.96
32	32	4.6	5.7e+02	2.7	0.1	1	19	1275	1293	1275	1295	0.94

Sequence Information

Coding Sequence: ATGTTAAAAGTTGAAGGATTACAGTCAAAATCCGACCCTGCTGCAGAAGTGAGCGAATACCTGAACCTGCCATCGCTAGATGGCAACGAAGAAGAGACTGACGAACAGAAGTACATCCTCGGCAAGTTGGAGATACTCAACGAGGAGGATGaagacgatgacgacgatgaagGACACACaatcgtcgtagacagtgaaaACGGCTCCATTCTACGGATGGTGGCTGGACAGAAGTTTATCTACGAGGGCGGAGAGATATCGTTGGTGATGCCCGATGATGATGAGCAGCAAGACGGTGATGGTGATCAACTCGAGAATGCTGATAGTCAAGaTTCTAACGATGAATCTCAGATCGAGTTACAAGTTTCTGGCGACGAGGAAACTGCCAACGCTATTATTGCTGCTGCTCAGGAACaagGCGGTGCCTTCATCAAGGTGGAGTCAGGCGAGATGTACCGCGTCAAGTCCGTGTCCAGTAGCACGCCCGCGCCACTGCAGATAGTGGCGCAGGACGGGAACCTGTTCAAGTGCTTGCTGTGCGAGAAAAACGATGAAACCCCATCAAGTGTTGAAGACGCAGACACAATGATGCGTCACTTAAAGTCACAGCATGACGCCAGAATATACCTGTGTCGCTTCTGTGGCGCCGTCATGAGAAAACGTACGGAATATGCGACGCATATAGCATCACACGCGGCGACGTCCCTGCGGCGAGGCGCGGGCGCACACCGCTGCGCCCAGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCGCGGCCCTACGTGTGCGCCGTCTGCGGGAAGGCCTTCGCGTCCAAGTACACGCATCAAGCGCATCTGAAGACCCATGCGGTCCGCCCGCGTCCCTACAAATGCACTCAATGCGATAAATCGTTCCTCACGCAACAAAATCTGAATCAGCATGAGAAAACACATTCAGGAATCAAGGATTTCGTCTGTAATATATGCAATAAAGCCTTCAGTACGCAACACAACCTGGAGGTGCACGGCGTGGTCCACTCCGGCAACAAGGCGTTCGTGTGCACCGTGTGTGGGAAGGCCTTCGCTAGGAGGGCAGAGCTGAGGGACCACATGCGGATACACACGGGCGAGCGCCCCTTCGCATGCGACATGTGCGGCGCGCGCTTCACACAACGCTCCAACCTGCACTCGCACCGCCGCGCCACGCACTTCGACGACAAGCGGTACCACTGCAACCTCTGTCCCAAGCGGTTCAAGCGGAGGCGACTACTGGAGTACCACATAAAGGCGTCGCACACCGGCGAGAGGCCACTCAAGTGCGGCATCTGCCACCTGTCGTTCGTGTACCCGGAGCACTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCCTATGTTTGTGAGATCTGCGGCAAATCGTTCAATTCCCGCGACAATCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGTGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGTGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGTGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTGTTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCAGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACGACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACTCTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGTGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCGCACATGAACACTAGCGTACGTATCTATTGCACACAACACTACACATACAAGAAGCCCTACGAGTGCGTCGCGTGCGGGGCCGGCTACATGCGCAAGCAACTACTGTACGCACATGAACACTAG
Protein Sequence: MLKVEGLQSKSDPAAEVSEYLNLPSLDGNEEETDEQKYILGKLEILNEEDEDDDDDEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDEQQDGDGDQLENADSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSSTPAPLQIVAQDGNLFKCLLCEKNDETPSSVEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYATHIASHAATSLRRGAGAHRCAQCGKCYSSRTLLAEHANLHSGARPYVCAVCGKAFASKYTHQAHLKTHAVRPRPYKCTQCDKSFLTQQNLNQHEKTHSGIKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCTVCGKAFARRAELRDHMRIHTGERPFACDMCGARFTQRSNLHSHRRATHFDDKRYHCNLCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRICCTQHYTYKKPYECVACRAGYMRKQLLYAHMNTSVRIYCTRLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQLYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHMNTSVRIYCTQHYTYKKPYECVACGAGYMRKQLLYAHEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -