Basic Information

Gene Symbol
clz9
Assembly
GCA_949987655.1
Location
OX465187.1:15724439-15726547[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.3e-07 0.00043 21.3 0.1 2 41 26 65 25 69 0.89
2 2 6.9 3.2e+03 -0.7 0.0 16 25 142 151 132 151 0.80

Sequence Information

Coding Sequence
ATGGTCCGCATTTACAAAAGAACTAATCTAAGTATCCGGAATGGAAAATATTACAAACCGTACGGATCATACAGCGATGAAGCCCTCCAACAAGCAATATCTTCTGTGCAAAAAAAGGAATTAACACTAACAGCAGCTTCTGAACGGTACGGTGTCCCTATTGCTACAATATCTCGAAAATCCAGAGGGCAAAATTGTACCCAGCGTAAATCTGGTCATCCTACCCTGTTCTCAAATATTGaagaagaaatatttattaaatatacccAAGTAGTTTCCGATTGGGGATTTCCCATAGATACACTCGACTTAAGAGTTTTGGCTCGCATATATTTGTCTAGAATTGGAAGGAATATTCCCTCATTGAAAAACAATACTCCTGGTCGAGATTGGGCTTTAAATTTTATGCAGCGACACAAAAGTCAACTTTCATTTCGCCACGCCAGTAATATTTCTTCAGCAAGAGCCGAACTTAACCAGGACAAAATAGAAcgcttttttaataattatgagaCTGTTTGTAATGGCATATCACCAGacagaataataaattatgatgaGACTAATCTTACTGATGATCCTggatcaaagaaatttatatGCAAGCGAGGGAAAAAGTATCCCGAAAGAATTATGGACTCTTCAAAAAGTGCAATCAGCATCATGTTTGCTGGTGCAGCTGATGGTACGTTGTTAGCCCCTTATGTAGTTTACAAAGCAGACCATTTATGGGATAGCTGGATACATGGTGGTCCTCCTAACACACGCTATAACAGAGCTCGTAGTGGATGGTTCGATTCTGTATGTTTCGAAGACTGGTTCGAAACTATTGTCATACCATATGCTAAAAATAAAGAAGGAGTTAAGATCCTGATAGGTGATAACTTATCATCGCATTTTTCATCTAAAGTTCTGGAATTATGTCAGAAACAtaacattaaatttatttgcCTGCCTGCAAAGGCAACGCATATAATGCAACCTTTAGACGTTGCTTTTTATGCCCCCTTGAAAAATTATTGGCGTCAAATATTGACTGAatggaaacaaaaacaaaatcgaagGATTAAAACGATGACCAAAGAAGGATTTCCACAATTATTCTCATTATTGTATCAAAAACTAACCGAAAATGATGTAgggaaacaaaatataataagcGGTTTTAATAAATGTGGGCTATATCCAATAAATCGGTCAAGGCCTATTGAAAGATTGCCTAAAAAACCACATAATACAGAAAATGTTGATATGAATGTTTCTACATCTGTGATTGATATGTTGAGCGAGTTACGAAACCCTCAACGAgaagaaattattaaaaaacgtaaaaagcGGGTAAATGTGTCGCCAGGAAAAAGTATTGGGATTGAGGACTATGAAAGAAAAGAAGACAGCATAGATAAAGAAAAAGAAGCGAAAAGAAAAGGTAAAGGAAAAGGTAAAAAATCAATggttatagaaaataataaaaatgccgAAAATGTAACACTGTTACCGCCCAATGcatgtttaaaaaattgttCTAGTCTGAATGATGAAGATGCAGGAAAGTTCCTGAAAACCGATCTCAATAAAAATAGGGAGCCATTAATGGAGAATAAAGATCAAAACATCACTCAATTTGAACCTCAACCATCTACAAGTCGCGgtcaaacaaatagaaaaagaGCACAAAAAAGATTGATAAGTGCTTCCAGCATAAGTTCAAACAGCAGTGTTGAAATGAGCTGTCATAGCGACTCTGATATAATAGACTGCTCTCTAGAGTCATACAATTCAAATGTAACTTCACAACTGGATGGTTCTTTTGATGAAGAATCTGTTAGACATTCAATAGCAATCAATGATGACGTATTGATAAGGCATCACTTTAATGAaaatgtacaatattatttagcTCAAATTGAGAGCATAGAAGAATTACATTACGCTGTTGACATTTACCAGGTACGGAAAACAAAACAAGGTTTAAGATTTGCCAAAACCAAGAATAGAAACACCACCAAAGTTTTGAAGAATAATGTCATGAAACCGGTGCAATTAATAGAAAccgaaaataatgtttttgtgcTCCTAGACAAATCTGATTCAGTTTATTTtgtatga
Protein Sequence
MVRIYKRTNLSIRNGKYYKPYGSYSDEALQQAISSVQKKELTLTAASERYGVPIATISRKSRGQNCTQRKSGHPTLFSNIEEEIFIKYTQVVSDWGFPIDTLDLRVLARIYLSRIGRNIPSLKNNTPGRDWALNFMQRHKSQLSFRHASNISSARAELNQDKIERFFNNYETVCNGISPDRIINYDETNLTDDPGSKKFICKRGKKYPERIMDSSKSAISIMFAGAADGTLLAPYVVYKADHLWDSWIHGGPPNTRYNRARSGWFDSVCFEDWFETIVIPYAKNKEGVKILIGDNLSSHFSSKVLELCQKHNIKFICLPAKATHIMQPLDVAFYAPLKNYWRQILTEWKQKQNRRIKTMTKEGFPQLFSLLYQKLTENDVGKQNIISGFNKCGLYPINRSRPIERLPKKPHNTENVDMNVSTSVIDMLSELRNPQREEIIKKRKKRVNVSPGKSIGIEDYERKEDSIDKEKEAKRKGKGKGKKSMVIENNKNAENVTLLPPNACLKNCSSLNDEDAGKFLKTDLNKNREPLMENKDQNITQFEPQPSTSRGQTNRKRAQKRLISASSISSNSSVEMSCHSDSDIIDCSLESYNSNVTSQLDGSFDEESVRHSIAINDDVLIRHHFNENVQYYLAQIESIEELHYAVDIYQVRKTKQGLRFAKTKNRNTTKVLKNNVMKPVQLIETENNVFVLLDKSDSVYFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246840; iTF_01246841;
90% Identity
iTF_01246840; iTF_01246841;
80% Identity
iTF_01246840;