Pfla042330.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465201.1:7063371-7064138[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-07 0.00033 21.7 0.0 1 38 15 51 15 55 0.92 2 2 4.4 2e+03 -0.0 0.1 15 32 172 188 170 188 0.81
Sequence Information
- Coding Sequence
- ATGGCTCGTACTAAGAAAGAAGTAAGAAAAATTGGCAATCACACCAAGGAAGACATGCAGAAGGCACTAGATTTGGTAAAAAAAGGACGTAGTATACACAAAGCAGCAAAAGAGTGTAATTTGAAATATTCTACACTGAGGAGATACGTAAAGAAACTGGAACTGGATCCCGATGCTAATGTTATCCcgaattatgaaatcaatgcaGTGTTCACGTCCGATCAAGAAAAGGCACTGAATGACTACATCACAGAATGTGCGCTCATGTTCAATGGCCTAACTTCCAAAGAATGCAGACAATTTGCTTATCAGATGGCAAATAGATACAATCTAAAAGTCCCACCTTCGTGGATAAATAATCAAATAGCAGGGCAAGATTGGTACAGATCATTTAAAAAACGACACTGTGAGATAAGCATGGAAAAACCTGAAACATGTAGCCTAGCGCGTGCTACAGATTTGAACGTAGTAACAGTGGAAACAGTTTTCGAAAACTTAAAAGAAGATATGAAGGGAACTTCAACCACCACGATGCAACGTCAGCATAATGTGCCGAAGGGAACCAACGACTGCAAAACTACAAGCGTTGAAAGAGGCGTAGGTATAATTTTGTTGTTGCGACATCTatatcgccacatgcgaactacgcatcgcactgacgtcacgcaaaaatcctgcatcgcgcaagcagagttttcCACACAACTAGCATTTTTATCCAACGTCCCGACGTCTTTGATCGGCCCACCAAACTCAACACCCGTCTAG
- Protein Sequence
- MARTKKEVRKIGNHTKEDMQKALDLVKKGRSIHKAAKECNLKYSTLRRYVKKLELDPDANVIPNYEINAVFTSDQEKALNDYITECALMFNGLTSKECRQFAYQMANRYNLKVPPSWINNQIAGQDWYRSFKKRHCEISMEKPETCSLARATDLNVVTVETVFENLKEDMKGTSTTTMQRQHNVPKGTNDCKTTSVERGVGIILLLRHLYRHMRTTHRTDVTQKSCIAQAEFSTQLAFLSNVPTSLIGPPNSTPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00120456;
- 90% Identity
- -
- 80% Identity
- -