Pfla004619.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465172.1:21578010-21580159[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 6.6e-05 23.9 0.0 4 40 18 54 15 58 0.90
Sequence Information
- Coding Sequence
- ATGGTCAACAATTACAAACGCAAAACTACCCAGGCGTCTTGGGATGAAGTTACGATGGCCCGAGCAATCAAAGATATAAATGAAAAGCGCGGCTCAGTTAAATTTATCGCAATAAAATACGGTATCCCTCGTACAACTCTCAGAAGACACTTGCAAACAGGATCTGCCATCAAGAAACTTGGTAGATTTACAACAGTATTTACCCCAGAGCAAGAAGAAGAGCTCCTAGAGTACATGTTTCATATGGACAACCTCTTTTTTGGCCTTTCAAAGGAAGATTTTCTGCAGCTTGTATTTCAATATGCTGAAGCAAATCATATTCCACATCCttttaaaaatgaaaccgcCGGACACGATTTTTATAAAGGTTTTATCACGCGTCATCCTAATTTGACCTTGAGACGACCAGAACCTACATCAATCGCCAGAGCCCGGGGCTTCAACAGACCCCAAGTTTATCGATTCTTTGACCTGCTGGAAGCTGAAATTGAAAAGCATCAAATTGACGCAATGCGTATTTATAATATGGACGAGACTGGAGTACAAACATCTTCCAACAAACCTCCAAGAGTTTTAACAAAACTGGGCAAAAAGCAAGTGGGTCACATTGCCAGTACCGAGCGAGGAAGAACAACGACAGTTATTTGCTGTTGTAATGCTGCGGGTTCCTTTATACCACCTTTAATGATTTTTGCAAGGAAAAGAATGGCACTGAACCTTCTGGATGGAGCGCCTCCGGGCACCCAAGCCACTGTCAGTGATAATGGATGGACCAATGGCGCTGTGTTCTTGGAGTGGCTTCGTTTTTTTATAGATACAGTGCGTCCGACAGCAGAGAAAAAAGTACTGCTTGTCATGGACAATCACGAGTCACATAAGTTCTTGCCAGCTCTAGAACTCGCCTTCAAGAATAATGTCATATTTTTATCACTGGCACCACACACTACGCACCGAATGCAGCCCCTAGATTTCTGTGTTTATGGGccattaaaaacatattttgagCGAAGTGTGGCGACATTCCAAAAAACTCACGTGGGTCGGATAATCAATCAAAAAGATGTGGCTGGTTTGTTTGGAACTGCCTATTTGCGAGCGGCAACAACCCAGAACGCTCCATATGAAGATCCACCCGTAGAGGACTGGATTCGCTGTGATGACTGCCAGTTATGGGCTCATGAATCGTGTACGACGTATTCCGGAACTGGAGCTTACTACTGTGATAACTGTCAAGAAATCTGA
- Protein Sequence
- MVNNYKRKTTQASWDEVTMARAIKDINEKRGSVKFIAIKYGIPRTTLRRHLQTGSAIKKLGRFTTVFTPEQEEELLEYMFHMDNLFFGLSKEDFLQLVFQYAEANHIPHPFKNETAGHDFYKGFITRHPNLTLRRPEPTSIARARGFNRPQVYRFFDLLEAEIEKHQIDAMRIYNMDETGVQTSSNKPPRVLTKLGKKQVGHIASTERGRTTTVICCCNAAGSFIPPLMIFARKRMALNLLDGAPPGTQATVSDNGWTNGAVFLEWLRFFIDTVRPTAEKKVLLVMDNHESHKFLPALELAFKNNVIFLSLAPHTTHRMQPLDFCVYGPLKTYFERSVATFQKTHVGRIINQKDVAGLFGTAYLRAATTQNAPYEDPPVEDWIRCDDCQLWAHESCTTYSGTGAYYCDNCQEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00836499;
- 90% Identity
- -
- 80% Identity
- -