Pfla028036.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465188.1:9844852-9845691[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 6.4e-06 27.2 0.1 3 40 16 53 15 58 0.92
Sequence Information
- Coding Sequence
- atgGTACGAAACTATAACAGAAAAACTACTGACAAATACTGTCAGGAAACACTACACGAAGCAGTCAAAACAGTACGGGAGCAGCGTATGACAGCTTTGAAAGCTTCCAGAGTTTACGATGTTCCAAGAGCAACTATAATTTCACACGTAAATGGTGCTCGTGGTGCAAAATCACAATCTCATGGGAGACCAACAGTTTTTGCAGCGGAGTTTGAAAAGAAAATGGCTTCAATGCTACATACGATGGAACGCCACGGATTTGGACTAACCCAAAGAGAAATACGAGCTCTTGTCGGACAATATGTTCGTCGAAATAATATGGACACCCCCTTTACCAATGGGATTCCTGGGGAAGAGTGGATCAGAGCCttccaaaaaagaaataaattgtcATTAAAAAAACCACAAGCAGTGGAAATTGCGAAAAAGAAAGCCGCCGATCCCTTTGTTATCAAcgaattttataatttactccAAGGAATTTTACAGGAGCAAAAATTAGAAGGCAACCAAATATGGAACCTGGACGAAACGAGTTTCTGCCAAGACCCTGGAAAGTCTAAGATAGTTGGACTAAAAGGTTTTCAAGCCACTAGGACCACAAGTTCACCAGGCCGTGACAATACAACAGTATTATTCGCTTGCAATGCCTACGGCGAAAAGGTTATgcctttgattatttttaaaggaaCTTACCTATGGAACAGTTGGCTACCTGAGGATGATTCGGGTAACCAACTAGCCGTTGCTTCTACTTCGAAAGGTTGGATGGAAACTTCAGTGTTCGAAAGCCACTTTTCAAGATTCCACAAATTTGCAAAACGGGCAAACCGCAACTAG
- Protein Sequence
- MVRNYNRKTTDKYCQETLHEAVKTVREQRMTALKASRVYDVPRATIISHVNGARGAKSQSHGRPTVFAAEFEKKMASMLHTMERHGFGLTQREIRALVGQYVRRNNMDTPFTNGIPGEEWIRAFQKRNKLSLKKPQAVEIAKKKAADPFVINEFYNLLQGILQEQKLEGNQIWNLDETSFCQDPGKSKIVGLKGFQATRTTSSPGRDNTTVLFACNAYGEKVMPLIIFKGTYLWNSWLPEDDSGNQLAVASTSKGWMETSVFESHFSRFHKFAKRANRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850580;
- 90% Identity
- iTF_01246794;
- 80% Identity
- -