Pfla005235.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465172.1:28245649-28251522[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-11 7.1e-09 36.6 0.0 1 38 16 53 16 59 0.93 2 2 9.5 4.4e+03 -1.1 0.2 4 13 118 127 118 134 0.87
Sequence Information
- Coding Sequence
- ATGCCTCGACAAAGTGTGTTATCTCCATCTTCAAGGAAAACTTGGGATCCTGACCAAATGAAAAAGGCTATTGAAGCAGTGAGGACAAAGGTCATGGGCTATAAAAAggctgtaaaaatattttctgtgcCAAGATCTACACTGAAACGATTAGTGAAGGACTCTCAAGAATCTTTGGAGTTACTTGTGCATAAGCCTCTTGGTAATAGTACTGGTATTACCAGAAAGGACATAGTGGATGGTgtagacaccttattaaaattaaatataggaAAGCAGAGACTCGGGGACGTAGACGAGGACGAGGACGTGGACGTGGACGTGTCCGTGGACGCGGCCTCGGACGTAGTCAAGATGGCGAGGGCAGTGGTAGCAGTACTATACGACGCCAGAGCGTCATTACATCTAGCAGTAGCTCTGAAAGTGACGCAGTCGTGGAAACCGACTCTGAATATGACGACAATGTCTATCCGAATAGCGGACTTGAAAATTCAGATACGATCTGCATATTCTGTGACACCAGTTACTCTAGTGACAGACGTGGGGGAGGAGTGGATTCAGTGCCAGAGTTGCAATTTATGGGCTCATACAGCCTGTGCAGGTCCTGAAGGCGAATATTATGTCTGCGATTTTTGCCGTTAG
- Protein Sequence
- MPRQSVLSPSSRKTWDPDQMKKAIEAVRTKVMGYKKAVKIFSVPRSTLKRLVKDSQESLELLVHKPLGNSTGITRKDIVDGVDTLLKLNIGKQRLGDVDEDEDVDVDVSVDAASDVVKMARAVVAVLYDARASLHLAVALKVTQSWKPTLNMTTMSIRIADLKIQIRSAYSVTPVTLVTDVGEEWIQCQSCNLWAHTACAGPEGEYYVCDFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -