Pcas007350.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- nfxl1
- Assembly
- GCA_038024825.1
- Location
- CP149048.1:11950341-11952818[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 2.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 20 0.026 6.2e+02 1.0 0.2 4 10 169 175 168 176 0.96 3 20 1.6e-07 0.0037 17.6 15.9 3 19 186 202 185 202 0.95 4 20 0.14 3.3e+03 -1.4 1.1 5 10 226 231 226 231 0.96 5 20 3.8e-08 0.0009 19.6 15.0 3 19 239 255 237 255 0.92 6 20 0.47 1.1e+04 -3.1 0.7 5 10 279 284 279 284 0.92 7 20 1.4e-09 3.3e-05 24.2 13.9 1 19 290 308 290 308 0.99 8 20 0.00044 11 6.6 16.9 3 19 345 361 337 361 0.88 9 20 0.1 2.4e+03 -0.9 0.8 1 5 370 374 370 379 0.79 10 20 1 2.4e+04 -5.3 2.2 5 10 384 389 384 389 0.88 11 20 0.0016 39 4.8 17.9 3 18 397 412 395 413 0.91 12 20 4.5e-09 0.00011 22.5 15.9 1 19 422 440 422 440 0.99 13 20 4.1e-05 0.97 9.9 5.2 9 19 488 498 486 498 0.89 14 20 0.013 3e+02 1.9 5.3 4 11 510 517 508 518 0.88 15 20 0.19 4.4e+03 -1.8 3.3 14 18 547 551 547 552 0.85 16 20 0.52 1.2e+04 -3.2 0.2 7 11 567 571 567 572 0.83 17 20 2.4e-06 0.058 13.8 8.3 1 11 588 598 588 602 0.90 18 20 0.34 8e+03 -2.6 1.4 15 18 613 616 611 617 0.75 19 20 0.00039 9.3 6.8 15.4 4 19 630 646 628 646 0.90 20 20 3.4e-07 0.0082 16.5 11.9 1 16 687 701 687 707 0.87
Sequence Information
- Coding Sequence
- ATGGCGCGCCGGTACCGCGATGCGGCGGCAAAATTACAACAAAACGTGCAAAAGCATTTAAAGGGGATGAAAGAGCTTTCTTCTTCGGAAGATGAGGAACCTTATGAAACTAGTGTGCTGGAGAGTGTTCTACAAAGCTACAGGAGCGGCGGCGGTGACGCGCATATGCTCAACCGGACTAAGAACCTGCTGGAAGAATCTATTAGTGGCCGCCCGGTAACCTGCCTTATTTGCATCGGTTCCATTAAGCGTGCTCATTCCATCTGGACCTGTGAACACTGCTTCTCGTATTTTCATCTCACTTGCATACAGAAGTGGTCTAATGATAGTATTAGTCTCAGAAGCGAAGAAAACCATGGACCCATAGCTGTAGTAGTTCCCAAGAAAATAGAATGGTGCTGTCCTAAATGCAGGCATTCATATTCGAAGGAAGAAATACCTCGTAAATACCGCTGCTTTTGTGGTAAGACAGATGATCCTCCCTTTCATCCATGGTTAATACCACATTCTTGTGGAGAAGTATGTGGAAGAAGATTGTCAACTGGTGATAATTGTAAGCATAAATGCTTACTGTTATGCCATCCTGGACCTTGTCCCCCTTGCCCTCAAACTGTGAATGGAGTCTGCTTCTGTGAAAAAGAGCGCAAGAGGGTTCGTTGCAGTGCTGCACAGTGGACATGCAATCAACTTTGCAAGAAGCTTCTATCATGCAAATCACATAACTGCGAGAATACCTGTCACCCTGGTGATTGCCCCCCATGTAGCTATACCAGTTTACAAAATTGTCTGTGTGGAGCAGAGAAAATTCAGAGACCCTGCAATGACGCTCACTGGCGATGCAGTAAAATCTGCAACAAACCATTCTCTTGTGGTTACCATAAATGTGAAGAGATATGTCATCCCGGAAACTGTGGAGATTGTCCAAATTCTGGCATGCGTTCCTGTCCATGCGGAGCAAATAAACGCTTTGTGCAGTGTCCTGATGTTATGGAGACTTGTGTTGGCACTTGTGGGAAGATGCATGATGATTGTGATCATAGTTGCCCGGAGAAGTGTCATAAGAGCTCCTGTCCTCCTTGCCAAGTATTGATTGAGAAACAGTGTCATTGTGGTACTCATACAAGATCATTACCATGCAGCAAAGATTACAAATGTGAAACTAAATGCAGGGGTATTCGACCCTGTAGGAAACACGGTTGTGGGCGGAAATGTTGCAATGGAAACTGTCCACCTTGTGAAAAAATCTGTGATAAGCCCTTACAATGTGGCCGTCATAAATGCACAATGGTATGCCATCATGGTCCTTGCTACCCATGTCCCTTGGAATCAAAGGTAACCTGCAGATGCAAAGAAACCTATGTTGTAGTTCCATGTGGCCGAGAAAAACACACTAAACCACCAAAGTGCAGCCTTccttgtaaaattaaatacaaatgtgGTCATGTTGAAGAAAATAAACATTCCTGTCACTTTGGTGACTGCCCACCTTGTAAAGCTATCTGCCATAAATTGTATGAGAATTGTGACCATCAATGCACAGCTATTTGTCATGCTTATGTATCTGTTGTTTTTAAACAGGTTGAAAAGCCTGCAACACCTTGGGAGGTGCAACCACCAAAGACTAAAATAATGACCCTTGAATGTCCTCCCTGTGAAACACCTATTCCTATTATTTGCTTTGGGGAGCATGAAACGGGAGAGCAAGCCTGCCATATGGCAGCAAGGAGTCCCTGTGGCCGTGAATGTGGGCGACCATTACCCTGTGGTAATCATAAGTGTAAAAGACTATGCCATTTACATGGCCCTGACGTCAATTACCCCAATGTCTCTCACTCATGTGAGCCCTGTAATAGAGAATGCTTGGTACCCCGACCAGAAAAATGTTTGCATAAATGTCCTAGAGGTGCCTGTCATCCCGGCCCGTGTCCATCATGTAAAATTACAGAAAGAGTGTCTTGTCATTGTAAATTGACAGAGCTATATCTATGTTGTAGCGAGTTAATCACTGCTACTGAGGAAATGTTGTCATGCAAACAGCAGTGCCCCAAAAATATAGAATGCGGTCATAGGTGCCGTAACTTATGCCATTCTGGTCCTTGCGGAACTGATCAGGTTTGCACTAAGAAAACCAAAGTGTACTGTTCTTGTGGTAATTTAAGAAAGGAAGCTCCTTGCAATGCTGTAAGAAAAGGTGAGAATATACCAGCCTGTGATGAGACTTGTTTAGAAAAGAAGAAAACTTTGCAACTTGAAAAAGAGAAAGAAGAGAGAAGACGAAAAGAGATTGAAGAAGAAAAGAATCGTAAAGAGTTGGCGGAGTATGAGTGGAAATTGAGTggaaagaaaaagaaatataaggaGAAAAAGGTTTTGTCAAATGTAGACAACAGGAATGCTCTGCAGAAATATTGGATTCCCGTGTTATCGGTTGTAGTTGTTATTTTAGCAGctgtgtattttatattttatgtcgGATAG
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLKGMKELSSSEDEEPYETSVLESVLQSYRSGGGDAHMLNRTKNLLEESISGRPVTCLICIGSIKRAHSIWTCEHCFSYFHLTCIQKWSNDSISLRSEENHGPIAVVVPKKIEWCCPKCRHSYSKEEIPRKYRCFCGKTDDPPFHPWLIPHSCGEVCGRRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAQWTCNQLCKKLLSCKSHNCENTCHPGDCPPCSYTSLQNCLCGAEKIQRPCNDAHWRCSKICNKPFSCGYHKCEEICHPGNCGDCPNSGMRSCPCGANKRFVQCPDVMETCVGTCGKMHDDCDHSCPEKCHKSSCPPCQVLIEKQCHCGTHTRSLPCSKDYKCETKCRGIRPCRKHGCGRKCCNGNCPPCEKICDKPLQCGRHKCTMVCHHGPCYPCPLESKVTCRCKETYVVVPCGREKHTKPPKCSLPCKIKYKCGHVEENKHSCHFGDCPPCKAICHKLYENCDHQCTAICHAYVSVVFKQVEKPATPWEVQPPKTKIMTLECPPCETPIPIICFGEHETGEQACHMAARSPCGRECGRPLPCGNHKCKRLCHLHGPDVNYPNVSHSCEPCNRECLVPRPEKCLHKCPRGACHPGPCPSCKITERVSCHCKLTELYLCCSELITATEEMLSCKQQCPKNIECGHRCRNLCHSGPCGTDQVCTKKTKVYCSCGNLRKEAPCNAVRKGENIPACDETCLEKKKTLQLEKEKEERRRKEIEEEKNRKELAEYEWKLSGKKKKYKEKKVLSNVDNRNALQKYWIPVLSVVVVILAAVYFIFYVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023391;
- 90% Identity
- -
- 80% Identity
- -