Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149050.1:4852159-4860293[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.059 3.3 8.7 4.1 1 23 82 105 82 105 0.97

2 19 6.2 3.5e+02 2.4 4.5 1 23 182 204 182 204 0.96

3 19 0.0022 0.12 13.2 1.0 2 23 210 231 209 231 0.97

4 19 2.6 1.5e+02 3.5 1.4 1 23 237 259 237 260 0.94

5 19 0.076 4.3 8.4 3.8 2 22 504 524 503 524 0.96

6 19 0.73 41 5.3 0.2 2 23 780 801 779 801 0.96

7 19 0.057 3.3 8.8 1.3 2 23 881 902 880 902 0.96

8 19 0.14 7.9 7.6 0.8 1 23 910 932 910 932 0.97

9 19 0.12 6.7 7.8 3.6 1 23 964 986 964 986 0.95

10 19 0.00062 0.035 14.9 5.4 1 23 994 1016 994 1016 0.99

11 19 0.13 7.6 7.6 1.9 1 23 1101 1123 1101 1123 0.99

12 19 0.45 26 5.9 3.5 1 19 1178 1196 1178 1200 0.93

13 19 3.1 1.8e+02 3.3 1.3 2 20 1207 1225 1206 1228 0.94

14 19 0.04 2.3 9.3 0.3 1 23 1295 1317 1295 1317 0.95

15 19 0.0076 0.43 11.5 1.5 1 23 1323 1345 1323 1345 0.94

16 19 0.0086 0.49 11.4 2.6 1 23 1435 1457 1435 1457 0.97

17 19 0.00011 0.0064 17.3 1.2 1 23 1463 1485 1463 1485 0.99

18 19 1.2 66 4.6 1.3 1 23 1582 1604 1582 1604 0.96

19 19 0.0051 0.29 12.1 5.5 1 23 1614 1636 1614 1636 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.059	3.3	8.7	4.1	1	23	82	105	82	105	0.97
2	19	6.2	3.5e+02	2.4	4.5	1	23	182	204	182	204	0.96
3	19	0.0022	0.12	13.2	1.0	2	23	210	231	209	231	0.97
4	19	2.6	1.5e+02	3.5	1.4	1	23	237	259	237	260	0.94
5	19	0.076	4.3	8.4	3.8	2	22	504	524	503	524	0.96
6	19	0.73	41	5.3	0.2	2	23	780	801	779	801	0.96
7	19	0.057	3.3	8.8	1.3	2	23	881	902	880	902	0.96
8	19	0.14	7.9	7.6	0.8	1	23	910	932	910	932	0.97
9	19	0.12	6.7	7.8	3.6	1	23	964	986	964	986	0.95
10	19	0.00062	0.035	14.9	5.4	1	23	994	1016	994	1016	0.99
11	19	0.13	7.6	7.6	1.9	1	23	1101	1123	1101	1123	0.99
12	19	0.45	26	5.9	3.5	1	19	1178	1196	1178	1200	0.93
13	19	3.1	1.8e+02	3.3	1.3	2	20	1207	1225	1206	1228	0.94
14	19	0.04	2.3	9.3	0.3	1	23	1295	1317	1295	1317	0.95
15	19	0.0076	0.43	11.5	1.5	1	23	1323	1345	1323	1345	0.94
16	19	0.0086	0.49	11.4	2.6	1	23	1435	1457	1435	1457	0.97
17	19	0.00011	0.0064	17.3	1.2	1	23	1463	1485	1463	1485	0.99
18	19	1.2	66	4.6	1.3	1	23	1582	1604	1582	1604	0.96
19	19	0.0051	0.29	12.1	5.5	1	23	1614	1636	1614	1636	0.98

Sequence Information

Coding Sequence: ATGCTACAGCAAATGTCCTCGCCgagcgcgctagtcggcgagGTCGCGTCTCTCGTGCGACTCGAAGGCCGCGTGTGCGGCGACGCGTCTTCGGAGGCCTCCTCGGACGCCGCCGAAGATTTTGAACTACCACAGTGCAAGATAAGACGGAATTACAACTGCACAAAGTGCACGTTTTATACACAAAACCCTCGCGTTTACCTTGTGCATACTCGTGACGTTCactttgagaaaataaaaatatacgacTGCCCTCACTGCGTATATGCTTCGAGGCACCACCAGAAACTGGTAAGACATATAAAAATGGTGCACACGACACCATCGACCGCAGTAAAAACCGACACGGAACCTCTACCTTTTGCAGACGATTCCGTGGAACGAATAGAAGATTTAGTCGAAGAAGTTGAGGATTCGGAGGATGCCCAGATGGAAATAGAGGAATGTGTCGAGGAAAGTCGCTCCGTTGACATGGAAGCGGACAGTGAAAGAGTCGCCTCCGAAGAGGCTccttcaaatttaataaaagacaaGACGAAATTTTTCTCATGCAACaaatgtaattatgttacgCACATTCGGGCCAGATTTACGAAACATGTTAAATACCACTCGATGCCGATGATCAAATGTACGATGTGCGACTTCCGCACACCCTACAAATGGAACTTGGACCGTCATATGAAGAACCACGGTGGGAGTGGGAGTTTCAATTGTTCGATGTGCAACTTTACGGCAGACATCAAGCAGAGTCTGACAGTACACGAGATGAATCACCACACGCCGCCCGTGGGGCAATCGGTTGCGAGTCGCCGACGCAACCGGGTGGGTGCCAGCGACATCGCTCTCGCCGACGCAACGATCGCGCTCGTTACCAAGGAGGAGGAAGGGAGCGGCGACTCGCGCTCCTCGCACTCGGCCTCGGAAATGGGCCCGCAATACGCCGATATAGAGATGATCAGTTGCAATAGTGAATCAAATGATGCCACAGATTTAATTGATAAGAAAGATGATTCACAATCGGCGCAGGATCTGCAAAGTCAACAATCGCCTAGCAACACGTCTGATGAAGGGAAATCAAAGAGTAGGAAAATTCCAAGACCGATACCGCAGCTTATACCACTAGTGACGTCAACACCCAACCAACCTACTACAAAACCACAAACAGGTGAACCaccgaacaaaaaatttaaagaGAGCCCTGCCTCAGAATCGTCAGACACCAACACTGTTAAACTTGATACTTTACCATCCGACATCACATTGATACCTGTAAATAATCTCACGACACCCGCAAAAGAACCAACAGTACGGAAAAAGAACGAATCATTCTTTGACAGATTAAAAGAGCGGATTTTAACTGCGACTGGTGAAGAAGGTTCGTTAACATGTAAAAACTGCGGTTTTGAAAGTAAGTGTTTATCAGAACACTCCGTGCATGAGAAAACATGCACAACACAAATCAATCGCGTTCCAGCAAATAATGCACACACAAGTCTTGGATCCACACGATGTCAATATTGCAGGCACAGATGCAAGTCTAGTGCCGATCTTTACGTTCATATGAAAACGTGCAGCAAGAACGAAAAAATTGCCGAAAAGACAGCTGAAATTCAAGCTCCAGAAAATAGTGAGGCAGATGTGACAGTCCAAGAAAAAGATACAGAGCCACATCCTATGGAAAACGTAGTTTTCGTATGGAATAATATTGGACATGATAGTAATAAATTTGAAACACCATTAGATATCAGTATCAATGATGATTCCACTTTACCTGAGACAAGTAAAAACTATGATTTAGAAGTAGTCGACGAAAATGAAGTTATGAATTTATCACCGAGTCAAGCAGTTGGGAAAAAGGTTTTCAAATGTCCTCATTGCACATTCTGGGCTTCAACAGCATCCCGGTTCCACGTTCACATAGTTGGACATTTGAACAAAAAACCATTTGAATGTTCGCTTTGCAAATACAAGTCTAATTGGCGATGGGACATAACAAAGCATATTAAACTAAAATCTGCTAGAGACCCTGAACACAACGATGCTAAAGTATTGATGACTGACGAAACTGGTCGAAGAAATTATAGTAAATACAACAAATTCTTGGCGATGCCAATATTAAACGAAAATGGAGAGAATGAATTTCATTACATCGAGCAAAATACTTCGATCGATGGAAACATGGATATTGATGATTCTTATGATATGCATGACAATACTAGCATGTCACAAGATAATATGCAACCACTGAATCTACAAACACAATACGGCGACAACAGATTTGAAACGATGGACGACAAGATTGAAGACCCTAAAAAACCCAAGAAAACAATGTGGAAATGTAAAAGATGCAATTACAAGGATCCATCAAAAGATGCTTTATTGGCACATGTTCGCGAACATTCTAAAGCACCAGACACCCAAGACGAAAACAAGTCTTTGAATTGCAACAAGAAACCTGAAAATACTCCTGATCCAGCAGATTTGGCTTACAGATGTGGACACTGTAATCAACTCTCAAATTGGAAACACGTTATACAGAGACACTGTCGCCTGAAGCATGACGGAGTTATCAAAGTGATTACAACCGTCAAACCTAAACCAGACAGTAATTCAGTTTCTTTTAACGAGATGAACGACACGTGTACAAAGTGTCCATATAAAGCCACAGAcagaaaacaatttttgaatCACCTGCAACAACACCAACCATCGCCACACTCGATATTCAAATGTTATTTTTGCCCCTTCTTTGTTAAAAGTGAAAACGATCTCATGCAACACCTCATTTTACACGGTGTGACGGACCCGGAGGAATATATATCAAAAGCTATGGGTTGCAAATCGCCAATACTAGATCAAGGTACTTCTTCGTCATCAACAAAACGACATAAATGTACAGAATGTCCTTACGAAACCAACAGCAAATCTCAGTTTATGTATCACGAGCAATTCCACCGACTCCCGGCTGACACCCCTTATAAATGTCAAGAATGTAACTACAGCGTATCTAAGAGGCACCTACTCCATCAACACATGAGAGTTCACGGGatttttacaaagaaaactGAAATGGAACTGGAACTAGAAGCATCATCGTCTTTTTGTAAGACGGAAATTAAAACAGAAGAGGTCTCAGACCATAATATCGAAATACCCTTCGTGTGGGTTTCTGCGAAAAACGAATTCCATAAAATGTACAAATGCAGATACTGTTCGTATGTCAATtcacaaaaatgtaaaataccaAATCACGAGAAAATACACTGTATTGTTTTTGAAAACAGTGAgattactatttataaatgctTAGAGTGCAAATTTACTTGTGACAACGCTGGCAGACTAGCAGAACACTCAAAGACGCATGGGGAGATATATGGTCGCATTTACTGTCCTGTGGAGATCGATGTTCCTGATGATGAACAGATATCTAAGTTACGCAAAGTAATAGAGCTTGAGAAGTTAAACAATGTCGAAGGACCAAAAGAAGAAATAATATCGAAGGAATGtgaagaaattaaaattctgTTTTTCTGTCACAAATGTCCCGCTAGATTCTTTACCGACAGCGACTTAAAGGTTCATGACAAATTTCACGATCTCATGTTTACGAATAAATGCAAAAGCTGTGAATTTTCTGTTCCCCAAGAAGATGAATTAAAAGTTCATACGGCCTGCCATTCTGACGAATACCAAACAAAgactaaaatgttaaaattcaTGCACAGTTCTCATCCAGCGCACAAGGAACCGAAATTGGAACTCGTACATTGTCCAGTTACTTCTGATATTACTTGGGTAGTTTCCAATcgaacaaaaaattataacacatTAGACTCTACCAGAAAATTTACCGAACCAAAACATACTCCCAAACAATACAATTGTAAAGAATGTCCAGCTAAATTCCTAAAGAGTTCTGCTCTCACCTACCATATGGGACTTCACGGAGGTGCCGGCGATCACAGATGCAAGAAATGTAGTTACACCGTAAAGAATTTAGGAAATTTAGCAAAACATGAAGCATTACACGACAATGAGGGCAAAGTAAACAACTGTGACTATGAATCAGGAGACGATACGGACTACAAAAACGTCCCATTATCTGGCACAGACCTGTTCCAGAGAAAGACAGAGGCTCAGAAACGAGTGGTTACTGATAAGGACAAGTTAGTGAAACCCAATGATCATTTTCCGCCTGTTCTTCAAGCTGACCCACAATTTGGATACTTAATGCACGGCAATCCTGAGTTCATATACCCTACATATTTGAAAAACGGCCGCCAAAAAGAGAAGAGATACAAATGTCATAAATGTCCATCAGCCTTCGAAAAAAGGGAGCAATACAAAATACACTTGTCATTGCATGGTTCAAAACAAAGGTATAAATGCGAAGTTTGCGATTATTCCGTAAAATATTACGCCAATTATGTACAACATATGAGAAAGCATCAAATGAACGATGAAGCGCTGGCCGAGAGAAAGAAAACAAACGacgaaacaaatgaaacagACAATGAGAATCAGCAACAGGAAGGGACTGAGGGCAAAAAGGGAAAGAAAGAAGATAAGTTTGCAATTAAAACTATGTTAAAGCCGCAGAGTAGGCCGAAAAGTGATTTTCAGCAATTTTCTATTAGTGATCAGCAAACTCTTCGACTGCTGCAGCTAAGGCGCTCAATGAACAATACTGAAAATGAGAAAACCACAGATCCGTCCCCTACAAAGGAACGTAAACAACATATGTGTTTGTTATGTCCATATTCGAACCAGCGCCAAGACGCCCTCGCCAACCATTATAAGAGACACGACGATAATACCAACTCCAACAGTAGCCACAAATGTTCACATTGTGATCTAGTAGTGGTACAGTCACACTTTTTACGAGAACATTTGAGAACTCACTTCAATTTCCAGAAAACTTTGGCACCGGATCGTTTTCTCGCAAATGAAGGCGTTACATTTGTCATAAAGAAAGAAGAGGAAGACGATACGTTAGCGGAATTTAACATCGAAATGAAAAAGAAGAAATTAGAATCTGGGAAGGACAAAATCTTCGTTAATGTTAAAACCGGTGAGCTTCTGGTAGAATAG
Protein Sequence: MLQQMSSPSALVGEVASLVRLEGRVCGDASSEASSDAAEDFELPQCKIRRNYNCTKCTFYTQNPRVYLVHTRDVHFEKIKIYDCPHCVYASRHHQKLVRHIKMVHTTPSTAVKTDTEPLPFADDSVERIEDLVEEVEDSEDAQMEIEECVEESRSVDMEADSERVASEEAPSNLIKDKTKFFSCNKCNYVTHIRARFTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFNCSMCNFTADIKQSLTVHEMNHHTPPVGQSVASRRRNRVGASDIALADATIALVTKEEEGSGDSRSSHSASEMGPQYADIEMISCNSESNDATDLIDKKDDSQSAQDLQSQQSPSNTSDEGKSKSRKIPRPIPQLIPLVTSTPNQPTTKPQTGEPPNKKFKESPASESSDTNTVKLDTLPSDITLIPVNNLTTPAKEPTVRKKNESFFDRLKERILTATGEEGSLTCKNCGFESKCLSEHSVHEKTCTTQINRVPANNAHTSLGSTRCQYCRHRCKSSADLYVHMKTCSKNEKIAEKTAEIQAPENSEADVTVQEKDTEPHPMENVVFVWNNIGHDSNKFETPLDISINDDSTLPETSKNYDLEVVDENEVMNLSPSQAVGKKVFKCPHCTFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAMPILNENGENEFHYIEQNTSIDGNMDIDDSYDMHDNTSMSQDNMQPLNLQTQYGDNRFETMDDKIEDPKKPKKTMWKCKRCNYKDPSKDALLAHVREHSKAPDTQDENKSLNCNKKPENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPDSNSVSFNEMNDTCTKCPYKATDRKQFLNHLQQHQPSPHSIFKCYFCPFFVKSENDLMQHLILHGVTDPEEYISKAMGCKSPILDQGTSSSSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGIFTKKTEMELELEASSSFCKTEIKTEEVSDHNIEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSEITIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEIDVPDDEQISKLRKVIELEKLNNVEGPKEEIISKECEEIKILFFCHKCPARFFTDSDLKVHDKFHDLMFTNKCKSCEFSVPQEDELKVHTACHSDEYQTKTKMLKFMHSSHPAHKEPKLELVHCPVTSDITWVVSNRTKNYNTLDSTRKFTEPKHTPKQYNCKECPAKFLKSSALTYHMGLHGGAGDHRCKKCSYTVKNLGNLAKHEALHDNEGKVNNCDYESGDDTDYKNVPLSGTDLFQRKTEAQKRVVTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEALAERKKTNDETNETDNENQQQEGTEGKKGKKEDKFAIKTMLKPQSRPKSDFQQFSISDQQTLRLLQLRRSMNNTENEKTTDPSPTKERKQHMCLLCPYSNQRQDALANHYKRHDDNTNSNSSHKCSHCDLVVVQSHFLREHLRTHFNFQKTLAPDRFLANEGVTFVIKKEEEDDTLAEFNIEMKKKKLESGKDKIFVNVKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -