Pcas005177.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:21533043-21540982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 2e+02 3.1 1.4 2 23 351 373 350 373 0.94 2 13 3 1.7e+02 3.4 2.7 1 17 410 426 410 429 0.91 3 13 9.7 5.5e+02 1.7 2.2 2 23 437 458 437 458 0.89 4 13 2.6 1.5e+02 3.6 2.5 1 23 466 491 466 491 0.95 5 13 2.2 1.2e+02 3.8 5.1 3 23 915 935 913 935 0.92 6 13 9.3 5.3e+02 1.8 0.1 2 20 941 959 940 962 0.78 7 13 1.5 86 4.3 0.8 1 16 985 1000 985 1002 0.85 8 13 0.47 27 5.9 2.1 3 23 1085 1105 1084 1105 0.88 9 13 0.03 1.7 9.6 0.6 3 23 1147 1167 1145 1167 0.96 10 13 1.5e-06 8.7e-05 23.2 2.6 1 23 1173 1195 1173 1195 0.98 11 13 9.9e-06 0.00057 20.6 0.2 1 23 1200 1222 1200 1222 0.98 12 13 6.9e-06 0.00039 21.1 0.6 2 23 1229 1250 1228 1251 0.94 13 13 0.073 4.1 8.4 0.1 3 23 1290 1311 1289 1311 0.91
Sequence Information
- Coding Sequence
- atgtctgAAAATGGTAGAAAAAGATCCAGGAAGTCAAAGTTGGTGCCTCGTGATGTTTGCCTCGATGAAGAATCGGCTTTGGAGGTAGGCATACCGACTCAGGTGCAGACAGAGAAGAAACCGAAACTTCTGTTAAAAAAACTAGCGCTCGCCTGGACGAAACCGGCCTCCAGCTGCGCCGTCAAGACGGAGACCGAGTCCGCGCCCCCCGGCTCCCCGGCCCTCCCGGCCTCCCCGGCCTCCCCTGTGCCCGCCGCCGCCACCGCGCCCGCGCCGATACAGTTCTCCGTGAAGGTGGAGGTGGAAGAGTTTGACGAGCCGAAAGATGAACACTCGGACTACTTGAGATTCTTGTTCAACATGcccgacgacgacgacgagcTGTCGGTCGAGAGCGGGGCGAAGACGAACTCTTCCACGTCGGAGAGTGAGAAGCAGTGCACGCTGGATTTCAAAGCCGTCGTTAAAATGCTCAGCGTGCTCCACAAGCGGTTGCCCGACGAGAGGCAGCTGGTGGCGTACACGAGGAACGCGTGGGGCAAACTGTTCCACGAAATCGTTTCGAACGTAAACGAGCAGTGCGATGTCCAGAAGGCGCTGGCGGAGTGGAAATCGTGGGTCATCTGCTCGAAAACCAGAGAGACACCATTCCTGTATAAATGCTACGTGTGCCAGGCCGCCTGGTGGAGTCTGGCGCGCTTCCAGAACCACATCAAGATACATTTGTGTTTAAAGGTGCAGTGCGAGTTCGTTCACTCCGAATGTAATATTATCGGTTTCAATGGAAGGAGGCCGGAGCCGAAAAATATAGCGGCGCCGGGAAAGTGTTTCAAATGTGCCAAGAGTTACGAGGAGCACATGGCGAGCCGGACGGACCCGGAGCCGTACTACCGCTGCTCGTACTGCCCCGACAAGTTCCAGACGTGCTCGCAGCACGGCCGCCACGAGGGCGTCTGCCGCAACAACCCCAAGCGGCGCTCCaccaccgccgccgccgccgggaTATCCGCTCTCTTCAAATACAACTCCAacgataaaaaaattgaaataagaTGCAAAATTTGTTGTTCaatattttacactaaaactgaGGTAGAAGACCACCTGCGGTGGACGCACGCGGTGCGGTCCGACGAGCCCATAGTCGCGCCGGTCAAGACTTGCTCGCCGTGCGGAAAACTTTTTAGCTTGTACAATTTTCACGTTTGCCCCAAGAAGAGAGTGATACATCAGTGTGAATTCTGCCCTAGGAGATACCAAAACAAGTACATGTTGGAATGTCACAACATCCTGTCGGAGAACATGGAGCAATGTAACATCTGCAACAAGTTCATATCGAAGGAGTGCATGCAGATGGAGCACTACGTGACGCACAGCGACAACTTCCAGATGATGTACCGCTGCGTCGTCTGCAAGAAGATCAAAGTGTTCGACAACGAATTCAAACTGAAGTATCACAAGTCCAAATATCACTCCAAGTCGGACTACAGGAGGGCGTGCGATAAAatatTGACTCCGAAGTTTTTCTTGACAGAGTGCATTTACAATCCAGCTCCGCCAAagaaaaGAGCAGCACgagtttacaaaaaaaaagcaaaattgaTAAACAAagatgatatttttgttattcctAAAGAAGATGTGGCGAAACTGATGGAAGAATTACAAGATGACAATGATAATGAACCCGGAGACATGAGTGAGGAAGAAATAGATGTATGCATGCCTGTAGTGAAGAGAGAGACGGACGACGGAACTGAAGAACCATACCGGAATGTATATGAAGATGAAATTTACAGTGAAACGGAAATAGATGTTTGTGCACCTTCTATTAAACAAGAGGAACATGTAGCTGCCACCACCGAAACAAACTATGCGAGGGATAAACCAGACATTGAAGTAAATAAAGCAGAAATCCTAGTTCAAACAAACGAAGGCGAATATATAACTGCGGTGAAGCAAGAGGAAAATACAGATGTTGCAAACTTATATGAAATGAATACTATACCAGACATTGAATCTGAAACCATTATTGAAACAGAAGTAGACGTGCCGACAGTCAAGATAGAAAAGGCTTTAGACGTTACAAGCATTATACCAGACGAGGGAATCAATAAACAAGATAGCGTGCCTCGAGAAAACGAATGCGTCGTTACAGTCAaggaggaaaaaaatataaatgaaccCGCCGATGAACCGATAATTCAAATGAATGGTGATCGAAATATAGTTTTCGACTGCGATGCCAAGTCTAAATCAACAGATCACGTAATCGAATCGATGGATTCAAAAGATAAACTCCGTGAGCTAGTAGCCAGGGTGACCGCGGAGATGGCGGACCCGGAGTCGGACTCGGACCAGGACCAGGACACCCGGGCCGACACGCAGGCACACAATGATCACGAATATACAAAAGTGTTTAGAGTATCAAAAAGTGTCATGGAACCGGAagtgataataaaacaagaaatTAAAGAGGAGGACGATTTCTGCGACGACACGGTCGTCATAGGCGAGGAGCCGGTGAGACCCCTCTTTAAAAGCGATGCTTATGAACTGGATATGTTGAATTTAGAGCCAGAAATGATATTGAAGGCCGGTTACAGGAAACGTAAGCTGTACAACTGTAGCAGATGCCAGTTCAAGGGCTTCCACAGGGAATACAGACTCCACGTGGAGAGTCTCTGCGGGATCTCGCGGAGGGGACAGAGCAGAGGGGGCGCCGCCGCGGCGGACGTCCACTGCACCAAATGCGGACAGAATTTCACCACGATGAAGAGATACGCGCATCATTTCGTGAAGCACGGCTACCCGTATCTGACGTGTCCGCAGTGCCAGGTGGAGTTCGACAGCATCACCAAGCTGGTGCCGCACCTCGGCAACCACGTGAAGCAGAACTACGTGAGGATCCAGCTCATCAACGACCCCGAGGAGACGAGCCACGACCGCATATTCCAGTGCAAGAAGTGCAAGAAGATCGTCGACACGAAGGTCTCGTTCGTGCACTGGGAGAGGCACCTGAAACTGGTCGGCGCCgagccgccgcgccgccccgGACACCCCGGACACCCCAGCCGGCCCGGGCTCCTCGGCCGGCCCGGGCGCTCCGGGCCCGCGGGCCGCCCGGGCCGCGCCGAGCCGCCGCCACGGCCCGAAGCGCGCGCCCGTGCTCTCTCCGCGCCGCAGCTCCGCGAACTCCTAGGCCTGCTGCAGAGCCAGGAAACCGAGGAGCCGGCCAAGAAGATAAAGACCTGCATAGTGTGCGGGCGATTCTTCTCGCGGCAGAACGACTGCAAGCGGCACCTGGTGGAGCACCTGCTGGAGGACGCGTACACGAAGCTGGAGCGCGCGGAcggcgaggcggcggcggggggaGGAGGGGGAGGCGCCGGGGCAGGAGGGGGAGGCCGGGGAGCAGGGGGAGGAGGGGGGCTCGCGTGCCAGCTGTGCGGCGAGCGGCACGAGCGGCCGGACGCGTACAAGAAGCACATGCGCGACCACGCCGCGCTGCCGATATACCAGTGCGCGCTCTGCAACAAGACCTTCAGCGACTCCAGCAACTTCACCAAGCACAAGAAGATCCACAACCTGCGGGCGTACGTGTGCGACATCTGCGGGAAGAAGTTCCAGGCGAAGGTCTCCTTGGAGAAGCACATGGAGATGCACATGGAGACGGCGCCGCAGCCGTGCCCGCAGTGCGACAAGGTGTTCCCGCTGCAGTCGGCGCTGCGGCGGCACGTGCGGCAGCACCACCTGCGCCCGGCGCCGCGCTACAAGTGCATGATCTGCCGGGTGCAGTTCGACTGCCTCAAGGACAAGTGGGAGCACATGTGGCTCGCGCACAAGCAGCGCAAGGAGAAGGCCGACTGCCCCATCTGCGGCGCGTCCTACAGGAAGATGTCCGACGTGAAGCTGCACGCGGTCCGCGAGCACGGGCTGCAGGTCTCGCTGCCCAACGTCATGGAGCTCGTCGAGAAGTTCCGCCAGGAGTCCGTGCAGGTGCAGCGGCGGCTGCgcgccccgccggcgggggcCGAGCGGGCCGAGCGGGccgagcgtgccgagcgtgCCGAGCCGGCCGaggacagcgacagcgacgtGGTGCTCATAGAGGAGGAGCCGGAGACGTTGATCATTTACGAATGA
- Protein Sequence
- MSENGRKRSRKSKLVPRDVCLDEESALEVGIPTQVQTEKKPKLLLKKLALAWTKPASSCAVKTETESAPPGSPALPASPASPVPAAATAPAPIQFSVKVEVEEFDEPKDEHSDYLRFLFNMPDDDDELSVESGAKTNSSTSESEKQCTLDFKAVVKMLSVLHKRLPDERQLVAYTRNAWGKLFHEIVSNVNEQCDVQKALAEWKSWVICSKTRETPFLYKCYVCQAAWWSLARFQNHIKIHLCLKVQCEFVHSECNIIGFNGRRPEPKNIAAPGKCFKCAKSYEEHMASRTDPEPYYRCSYCPDKFQTCSQHGRHEGVCRNNPKRRSTTAAAAGISALFKYNSNDKKIEIRCKICCSIFYTKTEVEDHLRWTHAVRSDEPIVAPVKTCSPCGKLFSLYNFHVCPKKRVIHQCEFCPRRYQNKYMLECHNILSENMEQCNICNKFISKECMQMEHYVTHSDNFQMMYRCVVCKKIKVFDNEFKLKYHKSKYHSKSDYRRACDKILTPKFFLTECIYNPAPPKKRAARVYKKKAKLINKDDIFVIPKEDVAKLMEELQDDNDNEPGDMSEEEIDVCMPVVKRETDDGTEEPYRNVYEDEIYSETEIDVCAPSIKQEEHVAATTETNYARDKPDIEVNKAEILVQTNEGEYITAVKQEENTDVANLYEMNTIPDIESETIIETEVDVPTVKIEKALDVTSIIPDEGINKQDSVPRENECVVTVKEEKNINEPADEPIIQMNGDRNIVFDCDAKSKSTDHVIESMDSKDKLRELVARVTAEMADPESDSDQDQDTRADTQAHNDHEYTKVFRVSKSVMEPEVIIKQEIKEEDDFCDDTVVIGEEPVRPLFKSDAYELDMLNLEPEMILKAGYRKRKLYNCSRCQFKGFHREYRLHVESLCGISRRGQSRGGAAAADVHCTKCGQNFTTMKRYAHHFVKHGYPYLTCPQCQVEFDSITKLVPHLGNHVKQNYVRIQLINDPEETSHDRIFQCKKCKKIVDTKVSFVHWERHLKLVGAEPPRRPGHPGHPSRPGLLGRPGRSGPAGRPGRAEPPPRPEARARALSAPQLRELLGLLQSQETEEPAKKIKTCIVCGRFFSRQNDCKRHLVEHLLEDAYTKLERADGEAAAGGGGGGAGAGGGGRGAGGGGGLACQLCGERHERPDAYKKHMRDHAALPIYQCALCNKTFSDSSNFTKHKKIHNLRAYVCDICGKKFQAKVSLEKHMEMHMETAPQPCPQCDKVFPLQSALRRHVRQHHLRPAPRYKCMICRVQFDCLKDKWEHMWLAHKQRKEKADCPICGASYRKMSDVKLHAVREHGLQVSLPNVMELVEKFRQESVQVQRRLRAPPAGAERAERAERAERAEPAEDSDSDVVLIEEEPETLIIYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -