Pcas004890.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149046.1:18703163-18721521[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.005 0.29 12.1 1.5 1 23 296 318 296 319 0.95
2 9 0.00032 0.018 15.9 5.8 1 23 347 369 347 369 0.97
3 9 0.00025 0.014 16.2 5.0 1 23 375 397 375 397 0.99
4 9 2.3e-05 0.0013 19.4 3.6 1 23 403 425 403 425 0.99
5 9 1.2 69 4.6 0.7 1 23 727 749 727 749 0.92
6 9 2.4 1.4e+02 3.6 0.8 2 23 784 805 783 805 0.95
7 9 0.00037 0.021 15.6 3.5 1 23 810 833 810 833 0.98
8 9 0.038 2.1 9.3 3.9 1 23 837 860 837 860 0.95
9 9 0.12 7 7.7 0.2 3 21 873 891 872 896 0.93

Sequence Information

Coding Sequence
ATGAATTCATATCATAAAATATCACCTAATTCCTTGTGCCGCGTGTGTCTGGCCCAGAATACGCGTGTGGTGGATATATTTACCACGCGTTTGCACGATGTACTGGAGCGTCTCACCTGCATACCGCTTATTGCTGGCGACGGTTTTCCTCACTCAGTGTGTTACTTGTGCGAGGCGCAGTTGCTTAAATGCTACAAACTCAGGGCTAAAGCGATCACAGCTGATCGCATTCTGAAGAGACTAGTCCACGCAGGAAGTATAGTATCGGAAGATATGGAAAATGTGGATAGAAACAATCTTAAACTGAATCACAATCTGTGCATCTCCAGTATGGAGTTGGAGTCATATACTAGTCAGGAAATAGGAGTTCAAAATAAAGCAGTTCAGTACAAGGAACCGGAAGTCACAAGCATAACTGTAGAACCTACAgATGTAACAGTGACTATGGAAAAAGTAGTTGAACCAGAAGCAATGCCTGATAGTGAGGAACAGGCTGGTATTGAGGAACAGGCTGATAGTGAGGAACAGGCTGACTGTATACCTGTGTTTGTCGAGGTGCCACCGAGGGAGGAATCCTTCCAAGAGGAATTAGTACCGGATGCTATCGTTGAAATTGATGAGGATATTGTGGAAGtatTGACTTCAGGACCTGGTGTGGAAGAACACTTCGCTTCGGATATGGTGGTTGATGAAGAAGACAATGTCAGTGTCAAAATAGAGAGGCTCTCTGATGAGGAAAATGAAATTGCTGAACCACAACGCAGCGATGAGAAGTTTCTACAGAACCTAGTTCAGCAGGAGGCAAAAAATGCTGAAAAAAGGAGTAGGAAAGCAGCAAAGAAACCCTTGGACGCGTTAGAGATCACAAGACAGACGCATGAACGTTTCACGTGCAATGAATGCGGCGATTGGTACGTCACTAAGTCGAAGTTGGTTAGACACATCCAGAGacatcattttttaattagaggGGAGGCCTTAGCTCAGCTTTTGCCTCCTCCTCAACCTCCGCGACCTTCCACCAGAAGACATCCGCGCCACCACTGTCCTCATTGCCCCTACACCACATACAACAGCGGCAACCTAAGAACACATGTTCGGACGCACACCGGCGAAAAACCTTTCAAATGCTCCGAGTGTGATTTTAGATGCAGCCAAAAAGTACACCTAGAGGGGCATTTAAGAACCCACACCGGCGAAAAGCCGTTTGAATGCCCTTTCTGTGATTATAAAAGCAATAGGAAAAGCCATTTAAATTTACACCTGAGAACGCACACAGGAGAAAAGCCATTTCAGTGTACGCAATACAGTCTGTCAGATTCATCTGATGACAGTAATATGGTTATGATATGTCGAGTATGCTTAGTGACAGAAGGCAAGATGTACCATGTCACAGAGTACAATCTGGACTCTATGTATTTACAAATCACCGGAGTcaagTGGGACCCGTCAGACAGGTTGGCCAGCCACGTGTGCAGCGAATGCTCTCAACGGCTGCAAGCGGCGATCATTCTACGAAGTAAAGCGTTGCGCTCCCATCATCTACTGCTGGACCTCTGTCGACAGAGTCGCCCATCTATAGAGGATATTAAGTCGGTGGACCGCGAAAGGAACAAGCTGGCGTCGACATTGGCGGCTACTCACTTCCTGCCGTACAGCGTGCCAGCCACCAAAGACGAGCTTGAGtCGAGTGGGGAGGAGCTGAGTGGGCGTGGCCGCAGCAGCCTGGTCGCCATATTGACGGCGCCGCATCTACCGCCCCCTCCCCCTCCCCCGCCGCCGCAGCCAAAGCCGCCGCATGCGCCGACACACAACCACACCAACGGACTGCTAAATAGTgtacaaACGGAAGAGGGGCGGAGTGTCGGGGCGGGTGAGCCGGCGGGGGCGGCGGTGAGGGCGGGGGAGGGGGAGGCGGGGGGCGGCACCGCCATCGACGAGCTGATCGCCATCTACAACAACGACGGCGACGGCGACCGCCGCCTGCAGGAGCTCAACGACACGCAGACTCACACACCCGAGCCACACAACAACAAACAGAAAcaaaaACCCAAGAAAAGGGCGAAAGGCAACGACAGGCTCGACCAGACCCTGTTCACCATCAAGCCGGTCTCCGCTGAGGAGCAGATTGAAGAGATACGCAAACGACAGGAGACGATCCGGTTCAAGCGGGCGCCGTACAAGTGCGACCTCTGCTTCCGAGGATTCGTCATCGCTAAGGCGCACGACGCCCACATGATGAGACATAACCCGatAAACGGAGCGTACGAGTGCATGATATGTCGCGCGCGACAGAAGTCGCCGCGCGCTGTCAAGACGCATCTCTACGCGCACCATTCCGTCAGAATCAGGTGCAACAAGTGCGAATTCACCACAATGAATAGGAGTGTGGCGCGGAGTCACGAGCGATGGCACGCCGGGACCATATACCAGTGCCCGCACTGCCCGAGCCACTTCGATCAAGAGTCCACGTACAAGACGCACCTGCGCGTGATGCACGTGCACGCGTTCGCGTGCGCGTTCTGCGGCTTCACGTTCGTCAGCGCCAAGGGGCTCTGCGTGCACAAGTGCAAGCGGCACGCCGCCATCATGAAGGTACCATTGCTGGGTCCAAACTGCGAAGTGTGTGAGATCCGCTTCATCTCCGAGGAGGCGTACTCCAGACACCTCAAGCTGTCCTCCCGGCACAGCAGCAACAACCTTCCTGCGCCCGAGGAAGCGTCGACCGTGATCAACGTGTGGGGCGCTCGGCTGCCAGTAGCTGAAACCAAAGTACTGAATGACTTGCAATAA
Protein Sequence
MNSYHKISPNSLCRVCLAQNTRVVDIFTTRLHDVLERLTCIPLIAGDGFPHSVCYLCEAQLLKCYKLRAKAITADRILKRLVHAGSIVSEDMENVDRNNLKLNHNLCISSMELESYTSQEIGVQNKAVQYKEPEVTSITVEPTDVTVTMEKVVEPEAMPDSEEQAGIEEQADSEEQADCIPVFVEVPPREESFQEELVPDAIVEIDEDIVEVLTSGPGVEEHFASDMVVDEEDNVSVKIERLSDEENEIAEPQRSDEKFLQNLVQQEAKNAEKRSRKAAKKPLDALEITRQTHERFTCNECGDWYVTKSKLVRHIQRHHFLIRGEALAQLLPPPQPPRPSTRRHPRHHCPHCPYTTYNSGNLRTHVRTHTGEKPFKCSECDFRCSQKVHLEGHLRTHTGEKPFECPFCDYKSNRKSHLNLHLRTHTGEKPFQCTQYSLSDSSDDSNMVMICRVCLVTEGKMYHVTEYNLDSMYLQITGVKWDPSDRLASHVCSECSQRLQAAIILRSKALRSHHLLLDLCRQSRPSIEDIKSVDRERNKLASTLAATHFLPYSVPATKDELESSGEELSGRGRSSLVAILTAPHLPPPPPPPPPQPKPPHAPTHNHTNGLLNSVQTEEGRSVGAGEPAGAAVRAGEGEAGGGTAIDELIAIYNNDGDGDRRLQELNDTQTHTPEPHNNKQKQKPKKRAKGNDRLDQTLFTIKPVSAEEQIEEIRKRQETIRFKRAPYKCDLCFRGFVIAKAHDAHMMRHNPINGAYECMICRARQKSPRAVKTHLYAHHSVRIRCNKCEFTTMNRSVARSHERWHAGTIYQCPHCPSHFDQESTYKTHLRVMHVHAFACAFCGFTFVSAKGLCVHKCKRHAAIMKVPLLGPNCEVCEIRFISEEAYSRHLKLSSRHSSNNLPAPEEASTVINVWGARLPVAETKVLNDLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-