Pcas007508.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- RREB1
- Assembly
- GCA_038024825.1
- Location
- CP149048.1:14942277-14959831[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.08 13.8 0.6 1 23 96 119 96 119 0.95 2 12 8.6 4.9e+02 1.9 0.8 1 11 161 171 161 182 0.77 3 12 0.026 1.5 9.8 0.1 1 23 312 334 312 334 0.97 4 12 0.0014 0.08 13.8 0.4 1 23 343 365 343 365 0.99 5 12 0.00087 0.049 14.5 2.0 1 23 371 394 371 394 0.97 6 12 0.0035 0.2 12.6 1.6 1 23 743 766 743 766 0.96 7 12 0.00029 0.017 16.0 1.3 2 23 962 983 961 983 0.97 8 12 0.03 1.7 9.7 5.3 1 23 989 1012 989 1012 0.97 9 12 0.16 9 7.4 1.7 1 23 1044 1068 1044 1068 0.95 10 12 0.26 15 6.7 0.1 1 23 1093 1116 1093 1116 0.91 11 12 0.0022 0.12 13.2 0.2 2 23 1156 1177 1155 1177 0.96 12 12 0.033 1.9 9.5 5.3 1 23 1183 1205 1183 1205 0.97
Sequence Information
- Coding Sequence
- ATGCAGGGTGCGCCCAACGCGCCCGCGGCCCCCGCCGCCGAGCCGCCTGCCTCTCAACAAATCAAAACAGAGGAGGTGATTAGTGAGGCCAAGATTGAAACCAATCATCAAGAAGATATGGAAGTCATGAAGAGCGACAAGCAGGAGCCGAGGGTCACCAGGACGACCAGCATTGACAGCGACAATCAATCAGATAGGAGCGAAGAAGAAGATTCTAGAAGAGCTCGCAAGAGAGCAGCCTCCACGTCTCCATCTCCCATGCCATTGGACAAAAGATTCGCAAGGTTCCAGTGTCCGAAATGTGGACAGCGTTTCGACTCAGCGAACCTATTCGACCTCCATCGATTCACAGCACACGGCGATGACACGCGCACAGGGTTCAATGATCTCACCTTCGTGGACTTCTCCAGCAAGAAATTTCCCGAAATAGCACGAGGAGTGTGTGAACGCAACCCACACGTATCGGTGACAGAACAGCGTTACAGATGCGAAATGTGCTCCAGGGATTTCCCGTGCGGACAATCATTAGATATTCACAGAAAAACGTGTGCCAACCCAACGAGAATCCAAAGCCCAGAGCGAGTCGACCGCAGGGAAGATTTCTTCGCCAAGCTGGATCTAAGAAACAAATCTTATGGGATCCCTGGCACACTTACCCCGCCTATGGAACGATTCACGTCAAAATTCGAGGACGCGCACTTTGGAGGAAATGGCATTCGTCATATCGACGCTGCGAGAGACTTAGCAGATATCCCATCTATTTTAAGCATAACATCTGCGCCTGGAAGCCTCTTGGAGAGGCTTACGGGAACAAGAATACCTCTGGATGCCACGGTATTGACTCCTCCAGACACGATTGGTAAAGACAGAGACCAAGAAGAAACTCAAGATAATTTCGCCGCAGAGTTTAGACGAATGAAACTTCGCGGTGAATTCCCTTGCAGATTGTGTCCTGCAAAATTCCCTAATTTAAGAGCATTGAAGGGACATAACAGGGTGCATCTCAGCGGGACCGGACCTGGTCCTTATCAATGCAACATGTGTCCGCATGCATCTCTTGATAAGGCAGCATTAGTAAGGCACATGCGAACACACAACGGTGACCGCCCTTATGAGTGTGCAGTCTGCAACTACGCCTTTACCACCAAAGCAAATTGCGAGCGACATTTACGAAATCGACACGCTAAAGTAACCAGAGAAGACGTTAAACGCTCAATAATTTACCATCCATCCGAAGATCCGAACAATGACGAGGTAAACTCAAAAATAGCGAGGGATGAAGTAAAAAGGTCGCTAGCATTCCACACCCCCGAACCCGATAGGCGGTCTGACACTGGCCGTGATACTCCTCTATCCCATTTTACACCTAAATTTATCCCGGATAGACACCCCGTGGCTTCTTTAACACCTAAGCCTCTACCGGAATCACCTATTCTCCCAAGAGAGCCTGATATGCCCGTACCTAGAATAAAAGTAAAAGGCATCGGACAATTGAACCAAATAGCTGATTACAGACCCACAGAACTGTCGTTTAAAAGTAACGAAGTCTCAATGGAAAGCTACGATGAGGAAAGCCCTGTTGATCTTAGCACAAGCGACAACAATTGCGACGTTCTTGATTTAAGCAAGAAGAAACGCGACGTTGACGAAGATAATGATCCTAAGATACCATCGCGCCCCTCATTCGAACCTGATCCAGCGACCGTGGCTGCTTCTACATTTGAGAAAACTAGATTCCTTCTAGCTCAACATCAACAAAGATTTCTGGAAACATCTCTTCCGAAAATAGACCCAGCTTTTTATGCCACTCAACTTTCGCAACTTTACGCAGGCGGCGTGCCGAGTCTTCCTGGAATCGGTTTGCCGCCGTCCTTTCCTCTCAACCCCTACTTTCTTCAACCATCTTTTTTTCCCCACCCAACTGATTCCCAAGAACTTGCCGAAATAAAGCAACGAATTCAGAAAGAGATCATGTCCAGATTGAGTATGTCGGGCGGAAGACTTGTGACCGGCGATCCTGAAATTCAGCCGAAGCAAGAGCCTGAAGAGGAAGACCAGAAGCCAATCTTGAGAGATACTTCGCCAGTGCCGCCTCCCCGATCTGAATCTCCACCACGGCCATTGAGCAATAGCTTAATTCAGCAAAGCGACTCTGTCAAAATGGTCATAAAAAATGGCGTACTTATGCCAAAGCAAAAACAAAGACGCTACCGCACAGAGCGACCTTTTTCTTGCTCCCAGTGCTCGGCCCGCTTTACTTTACGCTCAAACATGGAACGTCACGTCAAACAGCAGCACCCGCAACACTGGAGCGTGCGACGACCGGCCCCGAGGGCTCCCCCACCGTACCCAACGGCGGATACGTTAGCTGATCGTGTAAAATTTGCGCTTTTAGCTCGTCATCTCGAGCGGCCTATACAACAGCCAGACCGCTCTCCGATACGTCGGGACTCCGATGAAGTCGCTGACAATGAAGAGGATGAAGACGATACCTTAATAATAGACGAGGAACCTGAAACTGACAGCAAGTCCGAACAGCACCTGGCAGCGCATAGAGCAGCCGAGGAAATCCTGATGGCGAGTCGTCAACAAGAAATGCATAAAGATTTCGATCTCAAAATCGCTGGAAATCTTATTAATAAGCCAATTCCTATCCCAGCGGATAAGACTGAGACGGGAACTGATCCCATACCCATTCCTGTGGAACCACTGATTGTCCCGGTAGTTCCAACTCGTAGCGACGAAGAGGAAGATGAGGAAGGACTCGTAGCTTCCACCAGCGAGGGCAATAACTCTGGCAGTGATGAaaacaaATCAGAGTCAGACACCGGAACGCAGCcaccgaaaaaaaaatccgccTACAGCTTGGCCCCAAACCGAGTGTCCTGCCCTTACTGCCACAGGAAGTTTCCATGGTCGTCGTCTCTCCGCCGCCACGTCCTCACCCACACTGGCCAGAAGCCCTTCAAATGCCCTCACTGTCCACTACTCTTCACCACGAAGTCTAACTGCGACCgtcatttattgaggaagcaCGGTGGATCAGCAAGAGCTATTTTAGCTGAGCCCATCCCGGACCCAGTGTCGCCTCCTCAGCAGAATGACATGAGAACAGTGCCAGAGAGGCCGTTTAAGTGCAACTCTTGCCCCAGCAGTACTTTCTCGTCTCTAGAAACATTGAAGAAGCATCTGTCCAGTCGACACGGAGCGGGCGAGTCCCAGCCGGCTTCCCCTAATCCTGAAGTGTTGGAAGAGACGACGGACGGAGGGTTAGCATTCAAGTGCCATTTGTGTGAGGCATCTTTTGGGGACCGAGGAGGCGCTCTAGGACACTTGGCTACCATGCACTCCACGGAATACGATCAGCTGGTCAGCAAGGGTGCCCTAGATGCTGCAAGCGACCGCAGCGAGAGCGCCGATGACGATGAAAAGGGGAAATTCCCTGATCACGCTAACAGAAAAGTGGTCTGCGCATTTTGCGTGCGCCGTTTCTGGTCGGCCGAGGACTTGCGTCGTCACATGCGCACCCACTCCGGAGAGCGCCCGTTCGCGTGCGACCTGTGCCGGCGGCGATTCACCCTCAAGCACAGCATGCTGCGACACCGCAAGAAACATAGAGAAGAGGTCACTGATGATGAAGAGGTCTCGCCGCCCACGACGCCCATTGAACGCGATGCTGGCAATGGATATAACTACAACGACGACGACGGTTCCGGCAACGAGATACCAAACAACGTGAACAACAACAACTCGCCCCCGGCCGCACACTACGACAAGAAGCTCAAAATACAAATGACATCGCGCAAGTACTCGTCCGAGGCCGAGAACGACGGGGAAAATGGCGACCTCATAGGAAAACTGCTGGGTATAAGGGACAagactattattaataaactctTGTCTTCTGCCGACGAGGCCGCTAAGTTCCTGGGGGTGAATAAATGA
- Protein Sequence
- MQGAPNAPAAPAAEPPASQQIKTEEVISEAKIETNHQEDMEVMKSDKQEPRVTRTTSIDSDNQSDRSEEEDSRRARKRAASTSPSPMPLDKRFARFQCPKCGQRFDSANLFDLHRFTAHGDDTRTGFNDLTFVDFSSKKFPEIARGVCERNPHVSVTEQRYRCEMCSRDFPCGQSLDIHRKTCANPTRIQSPERVDRREDFFAKLDLRNKSYGIPGTLTPPMERFTSKFEDAHFGGNGIRHIDAARDLADIPSILSITSAPGSLLERLTGTRIPLDATVLTPPDTIGKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKIARDEVKRSLAFHTPEPDRRSDTGRDTPLSHFTPKFIPDRHPVASLTPKPLPESPILPREPDMPVPRIKVKGIGQLNQIADYRPTELSFKSNEVSMESYDEESPVDLSTSDNNCDVLDLSKKKRDVDEDNDPKIPSRPSFEPDPATVAASTFEKTRFLLAQHQQRFLETSLPKIDPAFYATQLSQLYAGGVPSLPGIGLPPSFPLNPYFLQPSFFPHPTDSQELAEIKQRIQKEIMSRLSMSGGRLVTGDPEIQPKQEPEEEDQKPILRDTSPVPPPRSESPPRPLSNSLIQQSDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTADTLADRVKFALLARHLERPIQQPDRSPIRRDSDEVADNEEDEDDTLIIDEEPETDSKSEQHLAAHRAAEEILMASRQQEMHKDFDLKIAGNLINKPIPIPADKTETGTDPIPIPVEPLIVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDPVSPPQQNDMRTVPERPFKCNSCPSSTFSSLETLKKHLSSRHGAGESQPASPNPEVLEETTDGGLAFKCHLCEASFGDRGGALGHLATMHSTEYDQLVSKGALDAASDRSESADDDEKGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDEEVSPPTTPIERDAGNGYNYNDDDGSGNEIPNNVNNNNSPPAAHYDKKLKIQMTSRKYSSEAENDGENGDLIGKLLGIRDKTIINKLLSSADEAAKFLGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773242;
- 90% Identity
- -
- 80% Identity
- -