Pcas004802.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:17873861-17884216[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.23 13 6.9 5.1 1 23 293 315 293 316 0.95 2 11 0.014 0.79 10.7 3.5 1 23 323 345 323 345 0.98 3 11 0.066 3.8 8.6 0.6 1 23 349 371 349 371 0.97 4 11 6.2e-06 0.00035 21.3 3.5 1 23 376 399 376 399 0.97 5 11 0.72 41 5.3 0.3 2 23 405 427 404 427 0.81 6 11 0.4 23 6.1 0.0 3 20 438 455 437 456 0.94 7 11 0.012 0.69 10.9 0.1 3 23 468 489 467 489 0.89 8 11 0.1 5.9 7.9 1.0 2 23 495 517 494 517 0.92 9 11 0.0014 0.08 13.8 1.5 1 23 539 561 539 561 0.98 10 11 7.4e-05 0.0042 17.9 0.5 1 23 567 589 567 589 0.96 11 11 4.3e-05 0.0024 18.6 0.1 1 20 595 614 595 616 0.95
Sequence Information
- Coding Sequence
- atgttgaaaacttttaaaGTAGAAGTGTCGACCGTCGGGGAGTTGATAGCTTGCCGCATTTGCCTCGCAACTGATGTAAAATTAACTAGTATTCATGAAATACGTTTAGACGAGGCATATGCAGATCTTCTAGGCTGCACTCTGTCCACTTGGGATGGATTACCGCAGCATCTTTGTGCCTGGTGCAGACAACTTCTTACCAAGTTCTATAACTTCAAGATGCGAGGGTTGCGGGCGCAGGACCAGTTGAAACAGGCACTCCTGCACCAGCACTATATTACAACAGACTACATTCGCAGCATAGACCGCATGACCATCGGCTTAACCCTCTCACTCTCAACCTGTTGTCTGCCGCCACCTATATCATGTCACCACGAGGCTATTAAACTGGAAACTAGTGAAGCCATCAAACAAAGTAATGAACTAATGAGGTTGGAAGATGAAATGCCAATAGAGGTAATCGAGTTATCATTAAAAACAGAGGATCCAATTGATGACGTGGAACACAGTAATTGGACAGATGACGACCAGCCTCTATCACCAATTAAGGAAATAAttGTAGAGCCGGGTCCCGctctacaaataaaaaatgatatcCCAATTGACACAAGATTGCCAAAAAAATTAACGAAAAAAGGGACTACGAAACGGAAAACCAAAACCGTGAAACCGAAAACAGTAAAGTCTAAAACCGTTGAAGATAAAATAGAAGAGAAGCCTGAGACCAAAAAGAGACGAAAGACTGAGAGAGTGAGAGATGAGGATTTCCCCGAATTCGAAAAAGAGTACAGTTTCgacattaatattttgagtAGGGACCAGCAATTAAAAGCGATGGAGGCGAGAAAGGAGAGCTACAACTATGTGAATTCACCCTATAATTGCGATAAATGCTTCAGGGGTTTTCATTCAGAAGTGACGCTCagtaatcataaaattaaacaccACGACCCTAGCGTTGGGAAGCACGAGTGCGAGCTCTGCTTCTGCCGGTTCCGCATCCCGGGCACGCTGCGGCAGCACCAGGAGACGCACCGGCTGCGCTTCGTGTGCCAGCAGTGCGGGTTCGTCGCCCGGGACAGAGGTCATGCGATGACGCACTCCAGAGAACATAAAGGTCTTATGTATGTGTGCAAACACTGCGGGAAGTCtttcaaGAAGCGCACGTCGTTCGGGTCTCACATGCGACTCGCTCACCCGCACACGAACAAGTCGTGCGACGAGTGCGGCGAGACGTTCCTCGGGGAAATGGGACTCGTCATGCACAAGAAGAAAACTCACCAGAAGTTACCTGAGAGCGAGACATCTCTGTGCAAGGAGTGCGGCGTGCAGTTCGAGAGCATCCCGGCCTACACCAGACACGTGGCGTTCGCGGTCAAAGGATGCACGAACAAACGTGCGTGTACGTTATGCGGAGAGTTGTTCAAGACGGAGGAGCTGCTGACGGCGCACGCGGCCGAGCGGCACAGCGCCACCGAGACCAAGTGCGATGAGTGCGACATGACCTTCCAATCGGAGGCGTCTCGCAGCGTGCACCACGAGCGGGTGCACTTGAGGGTGCGCCTGCGCCTGCCGCGGAACAAGGCGGGGCTGCAGCACAAGAAGAACGGACAGTACATATGCGAGATGTGCGGGAAGAAATGCCTAAACAACGTGCTACTACAATACCACATCCGGTCGCACACTGGCGAGAAGCCTCATGCGTGCCCGCACTGTCCCAAGCGGTACGCCACCCCCGCCGGACTCTCTGTCCATACAATGTCGCACACTGGCGAGAAGCCGTTTAAATGCGCAGTGTGCGGGAAAGCCTTTGCGCAGAAGAACATGCTGCGAGCACACAAAACCGTAAGATATAACATATTTCATagtgcatattatattttctcaCAATTAAgccaatacaaaatattagatAACTAG
- Protein Sequence
- MLKTFKVEVSTVGELIACRICLATDVKLTSIHEIRLDEAYADLLGCTLSTWDGLPQHLCAWCRQLLTKFYNFKMRGLRAQDQLKQALLHQHYITTDYIRSIDRMTIGLTLSLSTCCLPPPISCHHEAIKLETSEAIKQSNELMRLEDEMPIEVIELSLKTEDPIDDVEHSNWTDDDQPLSPIKEIIVEPGPALQIKNDIPIDTRLPKKLTKKGTTKRKTKTVKPKTVKSKTVEDKIEEKPETKKRRKTERVRDEDFPEFEKEYSFDINILSRDQQLKAMEARKESYNYVNSPYNCDKCFRGFHSEVTLSNHKIKHHDPSVGKHECELCFCRFRIPGTLRQHQETHRLRFVCQQCGFVARDRGHAMTHSREHKGLMYVCKHCGKSFKKRTSFGSHMRLAHPHTNKSCDECGETFLGEMGLVMHKKKTHQKLPESETSLCKECGVQFESIPAYTRHVAFAVKGCTNKRACTLCGELFKTEELLTAHAAERHSATETKCDECDMTFQSEASRSVHHERVHLRVRLRLPRNKAGLQHKKNGQYICEMCGKKCLNNVLLQYHIRSHTGEKPHACPHCPKRYATPAGLSVHTMSHTGEKPFKCAVCGKAFAQKNMLRAHKTVRYNIFHSAYYIFSQLSQYKILDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -