Pcas021365.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- znf423
- Assembly
- GCA_038024825.1
- Location
- CP149065.1:4286084-4287283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00062 0.035 14.9 0.7 1 23 83 106 83 106 0.92 2 10 0.07 4 8.5 0.2 2 23 131 153 130 153 0.94 3 10 6.7 3.8e+02 2.3 2.9 2 23 176 197 175 197 0.84 4 10 0.026 1.5 9.8 0.2 1 23 201 223 201 223 0.98 5 10 2.8e-06 0.00016 22.3 0.8 1 23 228 251 228 251 0.97 6 10 0.074 4.2 8.4 0.1 2 23 258 280 257 280 0.90 7 10 0.00077 0.044 14.7 4.0 1 23 287 310 287 310 0.94 8 10 0.00011 0.0062 17.3 2.3 1 23 316 338 316 338 0.97 9 10 5.4e-06 0.00031 21.4 0.1 1 23 344 366 344 366 0.98 10 10 0.019 1.1 10.3 2.5 1 23 372 395 372 395 0.97
Sequence Information
- Coding Sequence
- ATGCCGGCTCCAGAGCGGACAACCAAAATCGCAAAGACGATCTACCAGTATTTAACTGAAAGCGCAGATGAGAACAAAATGATAATGGTTGCAAAGAAAGTGAAAACGGGTGCAACGAAAGTGAAGAAGGGCGCAACGAAAGTGAAAGAGAAAAGCCAATCCGAGTTATCCTTGCGCAGTGAAAACCTGAGAACAATTCTGTCATGTTCCAATGCGACGCCTATCCGCCGATTCGGCAGCGTGGGCTACATGTGCCACTTCTGTCCGGTGGAGTTCCCGAAACCGACTGACCTCAAGAAACACACCGCGGAGCAACACATCGACGTCGAAACGCCCGAAAAATATGTCCACAACAGGTGTACGGCCGTGAAACTAGACATAACCTCTCTCAAATGCAAGGAATGCAGCCTCGAGTATGACGAAATCGAGGATCTTCTGAAGCATCTCAAATTCGATCACGACGAGCTCGTCCATCTGGATGTTAAGAATCACATCGTGCCGTTTAAATTCGAGACGGAGAAGCTGCAGTGCGCGCTGTGCCCGCAGCAGCACTTCCACTTCCCGACACTCCTGGACCACATGCGGAGACACTGCAGGTTCTACGTGTGCGACATCTGCGACGAGGGGTACCTCACCGGGAACAGCCTGCGCATGCATCGCCGGCAGCACGAGGCCGGCGAGCACCGCTGCACCGACTGCGACAAGGTCTACGCCACCGCCATCAAACTCAGGAACCACATACAGACCGTGCACGAAGGATTCAAAAGAAACAAGTGCGGCTACTGCGGGGAGAGATTCGCTTACATAACGGGGAAGTTGGACCACTTGCAATCCGTGCACGGCATCAAGAAGCCCGATTTTAGATGTTTGCTCTGCGATAAAACTTTTAATCGCGTGAAGAATTTGAACGAGCATTGCAGGAGGTTGCATCTGTTGGAGAGGACGCACGAGTGCACGGAGTGTGGAATGAAATTTTTCGAGAAGTATAGCCTTCGAGAACATATGGTTAAGCACACCGGAGTCAAGGAATTCGAGTGCGAACTTTGTGAAAAAGCTTTTGGGTACAAAAGTGCGCTCCGGGAACATATTAAAATCCACACGGACGACCGCAGATTCAAGTGTGAATTGTGCGACAGCGCGTTCCTGCAGAAGTGCAGCTGGCGCGCGCATATGCGCAACAAGCATGGAGAGATTGTTTGA
- Protein Sequence
- MPAPERTTKIAKTIYQYLTESADENKMIMVAKKVKTGATKVKKGATKVKEKSQSELSLRSENLRTILSCSNATPIRRFGSVGYMCHFCPVEFPKPTDLKKHTAEQHIDVETPEKYVHNRCTAVKLDITSLKCKECSLEYDEIEDLLKHLKFDHDELVHLDVKNHIVPFKFETEKLQCALCPQQHFHFPTLLDHMRRHCRFYVCDICDEGYLTGNSLRMHRRQHEAGEHRCTDCDKVYATAIKLRNHIQTVHEGFKRNKCGYCGERFAYITGKLDHLQSVHGIKKPDFRCLLCDKTFNRVKNLNEHCRRLHLLERTHECTECGMKFFEKYSLREHMVKHTGVKEFECELCEKAFGYKSALREHIKIHTDDRRFKCELCDSAFLQKCSWRAHMRNKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246242;
- 90% Identity
- iTF_01246242;
- 80% Identity
- -