Pcas015865.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149057.1:9521476-9531929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.9 1.1e+02 4.0 0.2 1 23 86 109 86 109 0.93 2 20 0.98 56 4.9 0.1 3 23 114 134 112 134 0.96 3 20 0.0034 0.19 12.6 0.5 2 23 138 160 137 160 0.93 4 20 3.1 1.7e+02 3.3 4.0 3 23 165 186 163 186 0.95 5 20 0.65 37 5.5 0.7 2 23 396 418 395 418 0.95 6 20 0.081 4.6 8.3 0.0 1 20 426 445 426 447 0.95 7 20 0.0063 0.36 11.8 0.3 2 23 457 478 456 478 0.94 8 20 9.8 5.6e+02 1.7 0.6 1 23 494 517 494 517 0.77 9 20 0.00046 0.026 15.3 0.7 1 23 526 549 526 549 0.91 10 20 3.3 1.9e+02 3.2 0.3 3 14 628 639 627 649 0.80 11 20 2.5 1.4e+02 3.6 0.8 1 23 654 677 654 677 0.94 12 20 9.2e-05 0.0052 17.6 1.1 1 23 683 705 683 705 0.97 13 20 2e-05 0.0011 19.6 1.7 1 23 712 734 712 734 0.98 14 20 0.00011 0.0063 17.3 2.3 1 23 739 761 739 761 0.96 15 20 0.00065 0.037 14.9 1.6 1 23 767 789 767 789 0.98 16 20 4e-05 0.0022 18.7 1.1 1 23 795 817 795 817 0.94 17 20 0.0004 0.023 15.5 2.6 2 23 824 845 824 845 0.98 18 20 0.00045 0.025 15.4 0.6 2 23 854 876 853 876 0.97 19 20 0.00042 0.024 15.5 0.1 1 23 881 903 881 903 0.97 20 20 0.1 5.7 8.0 4.6 1 23 909 932 909 932 0.97
Sequence Information
- Coding Sequence
- ATGTCGTCCGATGAGTCGGATGATGAACCGCTGGCGGCGCTGGCGGCTGCTAAAAAGACAAATCCAGAACAGTTTGAAAATATAACGTCTAGGGATGAACCAGttaagaaaaagaagaaaatcCTGACTCCAAAGAAGCTGACCGCTATGACCATAAAGATTAATCGTGCTTTAAAGGCTGTATCCCTTCCTCCGGCCGTGGAACGACCTATGGATGTATGGTTGTACTTAAAGGACCTCAATCCTACAGGACCATACAGCTGTCTCTTGTGCTCTGAATGGTTCATAAACAGGTCTAAAATGATTGtgcattatatattaaaccatAAAAAGGATTTCTGTGGGATATGCAGATACTTTGTACCTGATAGGGAAGCATGGCAAGTTCATCTTAAATTCCATACCCCTTGGCCATGCTCACAGTGCACAAAGAACTTCGACACAGAGGCAGACCTACGGCAGCACTTTAGTTCCCAACACGGACTTGTTCATTGCAGGATGTGTCATTTTAGAGTTTCCGATAATGATCAGTATGACACTCATTTGTTAAAGAAACATACTGTATCTAATGTACAACACAAAGATGAGGATACATTGTGGGAGTTTGAATATGAAGGTAGTAACAAATTTACATGTATTCTTTGctcaaaagaaaatataatgtcTTCAACATTCTTCAATCACTACATGGGTTATCACCATTTTACGCTGAAATGTTTGTCTAGTATAATATCGGGAAGAGATTTACCATTTCTGGTGGGTGGTGCTGATATTAGTGCATCCTTCATAGACGGTCAGTTGAAAGAACATACCCGATTGGGCTACGTAGATCTTGAGCAGAAGCCAATAGAGCAAGGCCACGAGTCAGATCATAGTGAATCTGCTGAATTGCTAAAAGTGCTCATTCCTGAAATCAAACAGGAGGCCCTCAGTGAGCCAGAGGACTCCAAAACAGAGGATGATAAAACAGATAACAAGAAGAAGGTAGTGGTTAGAGATGAAAATGATATTGCAAATGTTTACAAAGGTGATGAAGACTTTGATGTAACTATGACGGAATTGATTGTACTGCAAAAGTGTTATTTCAACTATGTTAAGAATACCTTAAACTCAATAAATTCTAATTCAGTGCCATTGGTTTCTGACATTGATTATGAGAGTGCAAAATCTGAAGTTGTCAATATGGTTTGTACATTGTGCAATAACAATTTTGATAATGTCTTATCATTTTCGTCGCATATGTCTAAAATGCATTTGATAAAGATATCAGCAATGTTTTCGTGTCGTGTTTGTGCTGCCACGTTTGATAGCCAGCCAGAGTTGGAGACGCATATAGCTGGCGAGCTGGGTGACTTTGAAGATCTTTGGATATGTCAATTTTGTGACAAGGAGTTCGATAATCGGGTGGATACGCGACGGCATCTGATAGAACACCTGGGTGCTATGGAATTTGACAACTGCTTCAGCCCACATTTGGgattcaaatgtaaattttgtCCGACATTGTTCTGGAatgagacagacagagagatgCATCAAGTCCGTGTgcatttagataaatataaggATCAGTTTTATAAGTGTGAGGAATGTTCAGAAGTTTTTAGTGATAAgATCTGGTTAATCCACCATTTCATAGAGAAACACAATGTAGATGAGAATAAGTCTTCGTTCTTTCTGAAATGCTGTCTCTGTTCTGTTGTGATGGCCGAAGTTGATGGGATGAGGAGTCACTTTGAGAAGGTGCATCCTGAGGCTCGGAAGGTGTTCTGTTCTCTGGACTCCTGTCAGTACAGACCTTTGAGCCATCGGAAGTCATTCAAGTTTCATGTCAGGACCCTCCACGACCCGGCGGCGCgggctgcgccggcgccggtgGCGTGCTCGGTGTGCGGGCGCGAGTTCGGCTCGAACCGCGCGTGCGGCGCGCACGTGGCGCAGGTGCACGGCCCCGGCAAGTTCAAGTGCAAGCTGTGCAGGGAGGTCATGAATACTCTTGATGAGAGAAAACTCCACTACCTCATCCGGCACCCGGGGCGGCATCCGTTCGAGTGCGCGGAATGCGGCAAGTCGTTCCAGTACAAGTCCTCCCTGTACATGCACAAGCAGGAACACTCGCCCAACAAACAGAGTTACACTTGCACTTACTGCTCTAAAGTGTTCGTGAAAAGGGACTCATTCCGCGAGCACCTGCAAATCCACGAGGGCCCCCGGCACGCCTGCTCGTACTGCCCGATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGGCACACCGGCGAGCGCCCTTACGCCTGCTCCCAGTGCCCTCGGACCTTCTCCGACAAGGGCGCTTGCACTTCACACGTGAGAACACATTCCAAAGAGAGATCATACGCGTGCATATACTGTGGGCAGACGTTCGTTCAGAAATCGAAACTGACTTACCACATCAGAAAACACACGGGAGAGAATTTGGAGACTTGTACGATTTGCTCGAAGCTGTTTACTAGCGCTTGTTCTCTAAGGGAACACATGAAGATACATCAAGCCAAAAACAAGGAGTCAGTACAGTGCCCCTTATgtgATAAGAAATACCAAGATGAGCGCTACATGCTTCGTCACCTACGTACCTCTCACACCCGGTCCCACTTCCCGTGCCCGTTGTGTCCCAAGACGCTTACCAGCGCAGTGGGGCTGCGGCATCACGTGGTCACACACAGCGGGGTCAACACCTTCCGGTGCAAGTGCTGTCCAAAAACCTATGCAGTGAAGCGATCTATGGTAAAGCACCTCCGAAAACGACACAGCCTCAAAGCGCCAGACGTCAGTGTCAAAGATTATTTCAGCAGAGTCGACCCGAGAGACTGTAACTTAGCACTCAGCGAGGAAGCCATGACGCAAATATTTGGACCCGTGAAAAAGACCATGAACGACATTCTAATAGGTGATTTTGTGACGttcacaaaaaaattaaatactctGCAATCTGAGGACAATGACGATGACGACGGCAATGACGATGGTAATGACGGTAATGAGGGTAATGATTCTGATGAAGGTGATGGCAATGATGAAACGGCTAAAGTACAGGCGCCAGAGGTTTTTGTTAAAACTGAAAAACCCGATTTGGAGCCAACTGATTTTGTTAGTGTTAAAATTGAGCCAGTGGATGAAGATGAATGTCATTAG
- Protein Sequence
- MSSDESDDEPLAALAAAKKTNPEQFENITSRDEPVKKKKKILTPKKLTAMTIKINRALKAVSLPPAVERPMDVWLYLKDLNPTGPYSCLLCSEWFINRSKMIVHYILNHKKDFCGICRYFVPDREAWQVHLKFHTPWPCSQCTKNFDTEADLRQHFSSQHGLVHCRMCHFRVSDNDQYDTHLLKKHTVSNVQHKDEDTLWEFEYEGSNKFTCILCSKENIMSSTFFNHYMGYHHFTLKCLSSIISGRDLPFLVGGADISASFIDGQLKEHTRLGYVDLEQKPIEQGHESDHSESAELLKVLIPEIKQEALSEPEDSKTEDDKTDNKKKVVVRDENDIANVYKGDEDFDVTMTELIVLQKCYFNYVKNTLNSINSNSVPLVSDIDYESAKSEVVNMVCTLCNNNFDNVLSFSSHMSKMHLIKISAMFSCRVCAATFDSQPELETHIAGELGDFEDLWICQFCDKEFDNRVDTRRHLIEHLGAMEFDNCFSPHLGFKCKFCPTLFWNETDREMHQVRVHLDKYKDQFYKCEECSEVFSDKIWLIHHFIEKHNVDENKSSFFLKCCLCSVVMAEVDGMRSHFEKVHPEARKVFCSLDSCQYRPLSHRKSFKFHVRTLHDPAARAAPAPVACSVCGREFGSNRACGAHVAQVHGPGKFKCKLCREVMNTLDERKLHYLIRHPGRHPFECAECGKSFQYKSSLYMHKQEHSPNKQSYTCTYCSKVFVKRDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACSQCPRTFSDKGACTSHVRTHSKERSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKIHQAKNKESVQCPLCDKKYQDERYMLRHLRTSHTRSHFPCPLCPKTLTSAVGLRHHVVTHSGVNTFRCKCCPKTYAVKRSMVKHLRKRHSLKAPDVSVKDYFSRVDPRDCNLALSEEAMTQIFGPVKKTMNDILIGDFVTFTKKLNTLQSEDNDDDDGNDDGNDGNEGNDSDEGDGNDETAKVQAPEVFVKTEKPDLEPTDFVSVKIEPVDEDECH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -