Pcas016700.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149058.1:9260901-9272731[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0081 0.46 11.4 2.8 1 23 344 366 344 366 0.96
2 20 0.13 7.5 7.6 0.3 2 23 374 396 373 396 0.95
3 20 0.024 1.4 10.0 3.9 1 23 400 422 400 422 0.97
4 20 0.0013 0.075 13.9 0.7 1 23 427 450 427 450 0.98
5 20 0.046 2.6 9.1 1.0 1 23 454 477 454 477 0.90
6 20 0.052 3 8.9 0.4 1 23 498 521 498 521 0.90
7 20 0.052 3 8.9 0.4 1 23 542 565 542 565 0.90
8 20 0.052 3 8.9 0.4 1 23 586 609 586 609 0.90
9 20 0.052 3 8.9 0.4 1 23 692 715 692 715 0.90
10 20 0.052 3 8.9 0.4 1 23 736 759 736 759 0.90
11 20 0.052 3 8.9 0.4 1 23 847 870 847 870 0.90
12 20 0.052 3 8.9 0.4 1 23 958 981 958 981 0.90
13 20 0.052 3 8.9 0.4 1 23 1002 1025 1002 1025 0.90
14 20 0.052 3 8.9 0.4 1 23 1069 1092 1069 1092 0.90
15 20 0.047 2.6 9.0 0.1 1 22 1103 1124 1103 1128 0.92
16 20 0.0017 0.095 13.6 0.1 2 23 1146 1168 1146 1168 0.95
17 20 0.0051 0.29 12.1 2.4 2 23 1227 1248 1227 1248 0.96
18 20 0.00068 0.039 14.8 0.1 3 23 1255 1275 1254 1275 0.96
19 20 1.6 91 4.2 3.0 5 23 1284 1302 1281 1302 0.95
20 20 2.9e-06 0.00017 22.3 1.4 1 23 1308 1331 1308 1331 0.98

Sequence Information

Coding Sequence
ATGGTAGCTTATTGTTGCGTGAAAGGTTGCAGTAATAACAGTGGTAATAAAAAGCGAGATCCCAGTGATATTACATCTTTTCATGCGTTTCCTTCAAACCTAACATTAAAAGATAAGTGGTTGCGAGCCATTGGACGACCACACTGGGAGCCCCCGAGTTATGCTCGAGTGTGCAGTGCTCATTTCAGCTACGACCAGATCAACCATGACGGACGGAGGATACGGATCAAGGATGACGCTTGTCCCATCAATAACTTGCCTgcaAACTCCAACTTCGAAGCGTCCCATGTGGAGGTATGTCGAATGTGTCTTGCGACAGACCTGAAGATGTACAGCCTCCATGACGGGGTGCATAGGCTGTATATGGAATCTGTTGTTGGTTTTAATGAGAATTGCAATATAGAAGGCCTGCCTCTGTATATCTGCTATGAATGCGCGGCGCACCTGAAGAGAAGCTACAGTCTCGTGGAGAGGAGTCTCGTCGCACAAACAGCCCTCCTTGATGTTTTCGCTCAACATGGTcagaTAACGAAACAACTTATAAggttgctgaatcgaaaagaACTCAATCTGTCATCATCATTAGCATTCACCaaaaatagtgtaaattatgattataaatgtGATGATTTGAAAACAAATGATGGTCagattaaaaatgattttaataacTCTCATTTAGAAAGAAGTCTAGAAGTAAAGCAAGAGGAGATTtgtaatgattttaaaaatgtagaaaCATGTTCTTTGAATGATAATGACAATTTCGATGATTTTGATGCTAATGGAAATGAGAGTACAGAATTCATAGAAAGggaaactaaatatttaaatgaagctATGTTTGATGCAGCTGATGATaccgAATCCAGAGTGTCAACCAAGAAAGTAAAACGAAAAATCGGCACAGGCTTGACTCCGGATGAGACTgaaatgcaaaaatatttcactattgTTAATCTGACCCTTGAACAACAATTAGAAGAGTGGGACAGGAGCAAGCAGAAGAAACACGCCAGTGGGGAGATACACGCCTGTCCTACTTGTGGGAAACTGTTTGCgcatataaatacatacagacaaCATATGTATAGCCATGATTCGAGTCGCGGCGACAGTGTGTGCGCGGTGTGCCAGCGTCGGTTCAAGAGCGAAGCGCTGGCGAGCTCGCATACTAAACGAGCTCACGCGAAGAAGTTCCACTGCAAAACTTGCCCCAAGTCCTTCAGTAACGTcGCAGTAGCGAAGAAGCACCACAGGTGGCACAGCGGACACCGATACGAGTGCGCAACGTGTCCGTTCACGACGGCGCACCCGTCAGCACTGCGCGAGCACACGCGCCGCCAGCACACCGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCACGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTActagcacagcacagcacagtaCAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTActagcacagcacagcacagtaCAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTActagcacagcacagcacagtaCAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTActagcacagcacagcacagtaCAGTACAGTACAGTACAGTACTGCCCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTActagcacagcacagcacagtaCAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGTACAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGCACAGTACAGTACAGTACAGTACAGTACAGTACAGTACTGCCCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGTACAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGACACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGCACAGTACAGTACAGTACAGTACAGTACAGTACAGTACTGCCCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGCACAGTACAGTACAGTACTGCCCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGCACAGTACAGTACAGTACTGCCCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACACACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGTGAGTACTAGCACAGCACAGTACAGCACAGTACAGTACAGTACTGCGCACCACGCCTGCGCGCGCTGCGGCCACGCGTACAGCACCGCGCGCGGCCTGCGCCTgcaccgcgccgccgcgcaccACGCGCCGGAGTGCGACGAGAAGGCAGTGTATCGGTGTGAGGAGTGCGGCGTGGGATTCTATTCCGAAGGCGCGCGGCGAGTGCACCTGTTGACCTCCAAGCAACACAAGAAGAAAAATAGCTTGTGtgaCACATCATTAGGAgttgatttaataaatacctgtAGTATATGCGGGGCGCAGTTCATATCGCCGAGGGAGTTGATACTGCACCGCAGAGCGGAGCACAAGAACACGAGCCGGAGGAGAACCAGCTGGGGCATGCCCGGCGATAAGTATCCGACGAATTGCGAACATtGCGGGTTGCGCGTGGAGTCGCGGCTGCAGCACTGGCGGCACGCGCGTCACGCGCACGCGGcgctggcggcggcggcgggcggcTACCGGCGCGTCGTCGGCGCCGTCTGCCATCTCTGCGGGAAAGGCTTCCAGAGTTCTACGAAGCTCCGTCTGCACTCGTTACGTCACGGGACTCCATCGGTAGCGTGTCCGGAGTGCCCGAGACTGTTCTACGACAAGTACGCGCTGAAGCGACACGCCACGATACACAGCGCTGCGCGCCCTTACCGATGCCATTGTGGCCGCACCTTTCGACTCCGGGGGAGTCGAGACAGGCACGAAAGggTACATACGGGCGTTACGCGATATGAATGCAATATGTGCGGGAAGAAATTCAAATATTCTACAAGCATGAACTTACATATTCGCACCGTACATTATAAGTTACCACACCCACCgagaaaaaagaaattaaaacaaagtgatgatgataatgtgtaa
Protein Sequence
MVAYCCVKGCSNNSGNKKRDPSDITSFHAFPSNLTLKDKWLRAIGRPHWEPPSYARVCSAHFSYDQINHDGRRIRIKDDACPINNLPANSNFEASHVEVCRMCLATDLKMYSLHDGVHRLYMESVVGFNENCNIEGLPLYICYECAAHLKRSYSLVERSLVAQTALLDVFAQHGQITKQLIRLLNRKELNLSSSLAFTKNSVNYDYKCDDLKTNDGQIKNDFNNSHLERSLEVKQEEICNDFKNVETCSLNDNDNFDDFDANGNESTEFIERETKYLNEAMFDAADDTESRVSTKKVKRKIGTGLTPDETEMQKYFTIVNLTLEQQLEEWDRSKQKKHASGEIHACPTCGKLFAHINTYRQHMYSHDSSRGDSVCAVCQRRFKSEALASSHTKRAHAKKFHCKTCPKSFSNVAVAKKHHRWHSGHRYECATCPFTTAHPSALREHTRRQHTAHHACARCGHAYSTAHGLRLHRAAAHHAPVSTSTAQHSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQHSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQHSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQHSTVQYSTVLPTTPARAAATRTAPRAACACTAPPRTTRRTARGLRLHRAAAHHAPVSTSTAQHSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTVQYSTVLPTTPARAAATRTAPRAACACTAPPRTTRRTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTVQYSTVLPTTPARAAATRTAPRAACACTAPPRTTRRTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPVSTSTAHTARGLRLHRAAAHHAPVSTSTAQYSTVQYSTAHHACARCGHAYSTARGLRLHRAAAHHAPECDEKAVYRCEECGVGFYSEGARRVHLLTSKQHKKKNSLCDTSLGVDLINTCSICGAQFISPRELILHRRAEHKNTSRRRTSWGMPGDKYPTNCEHCGLRVESRLQHWRHARHAHAALAAAAGGYRRVVGAVCHLCGKGFQSSTKLRLHSLRHGTPSVACPECPRLFYDKYALKRHATIHSAARPYRCHCGRTFRLRGSRDRHERVHTGVTRYECNMCGKKFKYSTSMNLHIRTVHYKLPHPPRKKKLKQSDDDNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01246001;
90% Identity
iTF_01246001;
80% Identity
iTF_01246001;