Pcas015561.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149057.1:5464943-5472644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00017 0.0094 16.7 0.5 1 23 142 164 142 164 0.95 2 10 0.00076 0.043 14.7 2.4 1 23 170 192 170 192 0.96 3 10 8.7e-05 0.0049 17.6 0.3 1 23 295 317 295 317 0.98 4 10 0.00029 0.017 16.0 0.1 3 23 398 419 396 419 0.92 5 10 0.0014 0.078 13.9 0.5 1 23 434 456 434 456 0.96 6 10 1.2e-05 0.0007 20.3 0.2 1 23 489 511 489 511 0.98 7 10 0.00081 0.046 14.6 0.2 1 23 517 539 517 539 0.97 8 10 0.00046 0.026 15.4 0.3 1 23 545 567 545 568 0.95 9 10 0.012 0.7 10.9 1.1 1 23 581 603 581 603 0.96 10 10 0.011 0.61 11.1 0.1 1 20 765 784 765 787 0.93
Sequence Information
- Coding Sequence
- atGGATGGTGATGGGGAGGATTTTGCCCTCCATTGGGAGGAGGAGGTTGAGGCCAAGcACATTCCTGGTGTGGCGGCTTCAGAGGAAGTAATATGTGGCCTTGATAATGTGCAATCACATATAGAATACAATTCTAATatgacatcAGAAGTAGTTATACCGGACACGGACCAAATGGCAGCGGAGAACTTGATGTTCCTGTCACAAGATGTAGTGAGTTACACGGATGCTGCAGAGTTAGCTGTAGACCCCAATGTAGAGTGTGTTACGGAAGAAGTGATCACCGATGACTGGACAGGAGGGCAGGATAGAGTGGAGGTGCCTCTGGAACACTTTGGAAATCCAATTTTAGATTTGAAGGAGGAAAATGACATTGATGTACCTTTACCAACGGACCAAGACCAATATACAGCGATGCGACCGTTTCCATGTGACTTTTGCTCCCGTCGGTTCCGTAAGAAGGCAGCGCTTATGAACCATATGGTGGCACACCAGAACGACCGCCCGCACGCGTGTAATCTATGCGGCGTACGTTACGTGCGCAAGTGTGATTTAATGAATCATCTTAAAGTGCATGCTATGGTGCCGGATAACGCTGACCCTATGGACTTTGaaGATGTATTAGATAACAGTCAAGTTCTGAAACCAAAGAAGAAGAGAGGGCGTCGAAAAAAAAACCCGCCGCCCGTTGAGGAGAACAGCGAGATGTGGGAGAACATGACGTCAGCGCGCACGCAGCAGTGGTCTCGCCGGGCGCGGTCCCCGGCGGCTCGCGCCCCCTCCCCTCCGCCCTCGCCCCCCTCCCCGGCATCCCCGCCCTCGCCGCCGCGCCAGCCGCCCACGCCGCCCTCGCCGCCGCCCCCCGCGGACCCCACACGCCCGTTCGTCTGCCGGCACTGCGGCGTCGGGTTCGCCAGGGAGAAGGCGCTGCAGTCACATGCCAGGGTGCACGGCGGGGACTCGCCGGTGGAGTGCGGCGCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGGCGCACACGCGGCTGCGGCACCCGCAccagccgccgccgccgcaccaCGAGCCCCGCGAGCCCTACGACGACTCCAACTCCGGCGACGACGATATGGAATACCAGCTGTCGCCGTTGGCCGACAGCGGCAGCGAGCGCGCCGTGTACGACACGCAGCGCGGGCCGGAGCTGTTCTGCCAGGACTGCGGCGTCGCCTTCCAGCGGGCCGACCTGCTGCGGCGGCACCAGGCGGCCGCGCACAGCTACAAGCGGCACGACAGCGGCAGCAGCACGTGGCCGGAGCACACGTGCGACGTGTGCGGCGAGACGTGCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGCGCCACGCAGACCGCTCGCGGGACTCGCCGCCGCAGCCAGCCACCAGATATAAGAAGATGACACGAGGAAGAAATAACACTTCGTCGAGTGGTTCACGACAATTCCCCTGCAGAGAGTGTGGGAAAGTATTCGGTTCGCGAAGCTCTCAGCAGATCCATATAAGGATTCACACTGGCGAGAGGCCCTACGCGTGTCGGTTTTGCTGGAAGGCCTTCGCCGACGGCGGCACTTTGAGGAAACACGAGAGAATACATACAGGTGAGAAGCCGTACGCGTGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTCGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCGGACAGGCGGGCCAACgGTGGTCCCGCGTACTGCTGCGTGGTCTGCGGGCGCACGCTGCACTCGAGCGCGGAGCTCGTGCAGCATCTCATACAGCACTGCGACGCCAACACGGCGCTCAAGAGACAGCCGCAGACCGGTCCGCGAAAGTACAAGCGACGGCGGAAAATAAAATCGGAGGTGTCACCGCGGCGGGAGTGGGGACGCGGGTCCTCGAGCCCGGCGGCGtccccgcgccgcgccgcgtccCCCTCGCCCTCGCCGCCGCCGTCCCCCGCGTCCCCGGCGTCCCCGGCGTCCCCCGCCACCCCGCcctcgccgccgcgccgccgccgccgccgcgccgcgcccgcgccgcagCCGCGCCCCAAGATGATCCACACCGAGACACACACCGCGCGGCCCAAGGGGAAACAGggccgcccgcgccgcccccCTCGCCATCCGGCAGATGATCTGCGCGCCATCCGACCGCGATCCCCCCTTCCCACGCCCTCTCCACCCGTTTCACCCCCTCCCACCATCAAACAGTCCCCCCCTTCATCCCCAACGCCGAGCTCCCCCACACACGAGGGGGGGCCCTTCAAGTGTGAAATGTGCTCGCTGGAGTTCCCGCGGCGCGATGCGCTGTTACTCCACGTTCCCGTGCATATATGA
- Protein Sequence
- MDGDGEDFALHWEEEVEAKHIPGVAASEEVICGLDNVQSHIEYNSNMTSEVVIPDTDQMAAENLMFLSQDVVSYTDAAELAVDPNVECVTEEVITDDWTGGQDRVEVPLEHFGNPILDLKEENDIDVPLPTDQDQYTAMRPFPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDNADPMDFEDVLDNSQVLKPKKKRGRRKKNPPPVEENSEMWENMTSARTQQWSRRARSPAARAPSPPPSPPSPASPPSPPRQPPTPPSPPPPADPTRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGACGELCWSREALAAHTRLRHPHQPPPPHHEPREPYDDSNSGDDDMEYQLSPLADSGSERAVYDTQRGPELFCQDCGVAFQRADLLRRHQAAAHSYKRHDSGSSTWPEHTCDVCGETCTDALQLLAHAERHADRSRDSPPQPATRYKKMTRGRNNTSSSGSRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKIKSEVSPRREWGRGSSSPAASPRRAASPSPSPPPSPASPASPASPATPPSPPRRRRRRAAPAPQPRPKMIHTETHTARPKGKQGRPRRPPRHPADDLRAIRPRSPLPTPSPPVSPPPTIKQSPPSSPTPSSPTHEGGPFKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01464422;
- 90% Identity
- -
- 80% Identity
- -