Pcas018834.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- su(Hw)
- Assembly
- GCA_038024825.1
- Location
- CP149061.1:3898208-3903320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.11 13.4 1.1 2 21 25 44 24 45 0.93 2 13 0.00096 0.055 14.4 3.4 1 23 61 84 61 84 0.96 3 13 0.096 5.5 8.1 0.3 3 23 93 114 92 114 0.93 4 13 0.00029 0.016 16.0 0.8 1 20 119 138 119 140 0.95 5 13 2.3e-06 0.00013 22.6 0.2 1 23 151 174 151 174 0.96 6 13 2.8 1.6e+02 3.5 2.2 1 23 180 203 180 203 0.95 7 13 0.00013 0.0076 17.0 1.9 1 23 210 232 210 232 0.98 8 13 0.014 0.8 10.7 0.1 1 23 237 259 237 259 0.98 9 13 4e-06 0.00023 21.8 1.7 1 23 265 287 265 287 0.98 10 13 3e-05 0.0017 19.1 0.6 3 23 292 312 291 312 0.97 11 13 0.12 6.7 7.8 0.1 5 23 324 345 319 345 0.82 12 13 0.0011 0.062 14.2 3.4 1 23 351 373 351 373 0.98 13 13 2.4 1.4e+02 3.7 0.1 3 23 381 404 380 404 0.81
Sequence Information
- Coding Sequence
- ATGCCacctaaaagaaaaaaacctGGTCGAACTTTGGGAtccaaaaagaaaaagaatgctaatataaaaaaggaatgCCAACACTGTTCCTTGATCTTTAAAACGCAGACGCTCTTAATGAAACACCTCAGCAGTTGCAAGAAGAAGTTGATGGTAGATTTAGAAGCTAAAAAGGCTAAATTCAGTTGCACAGAATGCAGTAAAAAATTCAGATTTGAAAAAAGCTATAGCagacatttaaaattagaGCACTCCAAGGCACCAGGAAGTGTAGCCTGTAAGCAATGTCCAGTGCGGTGTCCAGATAAGACTGTCTTGAAACAACACATTGCAGAAATCCATGAGCGAGAGATATTTGAGTGCGAGCACTGCTCAAAACAGTTTGTTAGGAGAGCTCATGTTTTGCGACACATTGCCCAAAAAGGTTGTGATGGGGCACAAGTCAATTCTTTTCCATGTGAAATATGTAATGCAAATTTTACAAGAAAGGATAACCTGATTGTGCATCTACGATTGCAGCATATAAACCAAAATCATTTCCAATGCAAGGAATGTATATATCACACAGGCaacttttcaaaattgatTATACATGCACAGAAATTTCATTCAGAAAAGCCTAATCAGTTTGAATGCCATCACTGCGGGAAAATAACAAGTTCCCGAGCAGCAATGTCTAAGCACTTGGAGATCCATGGAGAAAAGAAATATGAATGTGATGTGTGTGGGTACAGCACATACACAATAGAAGTGATTCGGCGACATGTACTCACGCATGTGGCGGATAAGCCATACAAGTGCACTATCTGTGGACACTCTTATATACAGCGAGCTCAGCTCCAGAGGCACCTTGTCAAACATACAGGGAATATGTGCGACAAATGTGGATCCACCTTTAAATCTAAGGCCAGTCTGATAATCCACCAACGAGAACACATGGGGCTGGAGAAGCTCCTGTGTCCGTATAACGACTGTACTTTAGCCAAGAAGGAGTTCAGCAGCGAGGCCGCACTCACAAATCACGTGAAGATGCATTTAGATGATAAACCTTACTCCTGCGCCGTGTGCAAGAAGAAGTTCCACAACGAGTTGAACATGCGTCGCCACATCACCACGCACCAGCTGGAGCGGCCGCGGCGCTGCATGTACTGCGTGGCGCCGCGGGCGTACGTGCGCGGCGAGCAGCTCGTCAAGCACGTGCGCAAGAGCCACCCCGACCTGTTCCGCGGGCATCTGTCGCACGTCAGACAAGTCCTGGGTACGAACATAAACATTGACCGCGTGAAGAAGTCCGAGCTGGAGTCGATCCTGAACGTGTTGGACGCGGAGTCGGACCGCATCCTGCAGGGCTACGGCTCCGGCGTGCTGTACGGCGGCGTGCAGGAAATAGACCCCGCCGCGGAGGAGGTCGAAGTATCCACCAAGAGTGAAGATAGCCCGCTCATGTCTGAAGAGGAGCTCGCGCACAATCTGAGGAAACTGCTCGCCCAGCTCATTGACATCGAGAAACTGGAGTGCTTCGGGTGGCCCGGCGAAAGCGTCGATGTGGTATTGGAGAAAGTGATACAGCAATGCGGGGCGCGCGCGGCGGATCGCAACCGCTGGACGCGTGTGCAGCGCCTGCGTGAGAACGCTAAGCAACTGTTCCTGTACGTCATAGAGGACGCCAACATCGCTCGCATGCTGGACACGCACACCATCGACCAGATTGTCAAGCACATACTGACGCAAGTCGCCGAGGGCGATGCGGAGATTTAA
- Protein Sequence
- MPPKRKKPGRTLGSKKKKNANIKKECQHCSLIFKTQTLLMKHLSSCKKKLMVDLEAKKAKFSCTECSKKFRFEKSYSRHLKLEHSKAPGSVACKQCPVRCPDKTVLKQHIAEIHEREIFECEHCSKQFVRRAHVLRHIAQKGCDGAQVNSFPCEICNANFTRKDNLIVHLRLQHINQNHFQCKECIYHTGNFSKLIIHAQKFHSEKPNQFECHHCGKITSSRAAMSKHLEIHGEKKYECDVCGYSTYTIEVIRRHVLTHVADKPYKCTICGHSYIQRAQLQRHLVKHTGNMCDKCGSTFKSKASLIIHQREHMGLEKLLCPYNDCTLAKKEFSSEAALTNHVKMHLDDKPYSCAVCKKKFHNELNMRRHITTHQLERPRRCMYCVAPRAYVRGEQLVKHVRKSHPDLFRGHLSHVRQVLGTNINIDRVKKSELESILNVLDAESDRILQGYGSGVLYGGVQEIDPAAEEVEVSTKSEDSPLMSEEELAHNLRKLLAQLIDIEKLECFGWPGESVDVVLEKVIQQCGARAADRNRWTRVQRLRENAKQLFLYVIEDANIARMLDTHTIDQIVKHILTQVAEGDAEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -