Pcas004815.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:17985786-17991121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0011 19.7 0.9 1 23 242 264 242 264 0.99 2 12 0.067 3.8 8.5 2.9 1 23 271 293 271 293 0.93 3 12 0.57 32 5.6 1.8 2 23 298 319 297 319 0.91 4 12 0.00066 0.038 14.9 2.8 1 23 324 347 324 347 0.95 5 12 0.0057 0.33 11.9 0.0 3 23 354 375 353 375 0.96 6 12 1.1 60 4.8 0.0 2 20 386 404 385 406 0.92 7 12 0.00027 0.015 16.1 0.3 3 23 417 438 416 438 0.93 8 12 6.1e-05 0.0035 18.1 3.5 1 23 443 466 443 466 0.97 9 12 0.00031 0.018 15.9 0.8 2 23 508 529 508 529 0.97 10 12 4e-06 0.00023 21.8 0.4 1 23 535 557 535 557 0.98 11 12 0.00061 0.034 15.0 0.4 1 23 563 585 563 585 0.97 12 12 0.0011 0.064 14.1 3.9 1 23 591 614 591 615 0.96
Sequence Information
- Coding Sequence
- ATGGGCTGCCGATGTTGTCTTGCTACTGATGTTAAATTGCTAAACATATACGAAAATCGTCTTGCAGATGTATATGTTGAACTAACCGGGATTTCTGTATTGGCAGAGGATGGGTTTCCACAACACCTCTGCTCTTATTGTAGAGGTCTACTACTTAAATATGCAGCATTCAGGAATAGGTGTCTCCGGGCACAGGCAGTGCTACAGACAGAGATGGGTCATCATCAGATAACAACAGAATATATTAGTACTATAGACCGCTTTGCTCATAGACTGATGCTAAACCTAAAGACAGAGGAAACAAAAATTGTTGACACTACAGACTTCAAGGAAAATTtaattgaagaaataaaaaaagaaaccagTGACATTGAgcttgaaaatatatttatagatcCAGAAGAACTGAAGATGGAATGCGACTTAAAAGATAAAAGTTTGAATGATACAGTAGATGATTTTAGTGATGATAATTTGGAACATATTTTTGTGGCAACAAAACCTGCCAAGAAAGAGAAAAAGATGCGGAAGATAAGGAGGAGATTGAAGAAAGAGTCTCACAAAAAGATAAGGAGAAGATTGCCAAATAATGATTTCTTGCCAGATTTTGACATTGTTACATTTGAGAATAGTTATTGTGTGGAAATTGTTACCCTAACCAAGGAGCAGCAGTTGGAAGAGATTGAGGCGCGCAAGAAGTCTTCTAATTATCACTATGCTGCGTACAAATGCGATCATTGCGGCAAAGGATTTCGAGCAGAACCAGCGTTCAGAAATCACATGATCAGACACAGTCCGAGCATGGGTCCACACCCGTGCGAGATCTGCGGTGTGCGATTCAGGCAGCAGTGCCGGCGGCAGGAACACCAGGATCTCCACCGGCTGAAATTAATATGCAAGAAGTGCGAATTTGTCTCCCGGACTAGGTATCAAGCAAAGAAGCATTTCGAGTTCCACACCGGGAAAACCCATATATGTAAACATTGTGGCGCTAGTTTTCCTAAGAGTTCCACATACCTGTCCCACGTGCGGCTGCAGCACCCCGCCAAGAACGTGGCGTGCGACGAGTGCGGGGAGTCGTTCGTCGGCCGCCTCGGCCTCCTGCAGCACCAGTCGCGGGCGCATCAGAAGaACCCAAATAACCAACGTGACCTGACGTGCGCCGTGTGCGAAGTTCTGTTTGACACTCCGGAAGCGTTGGACAGACACACCGACATCTCTAATAATGCTTGTTCCGATATGAGGCCGTGTAAGCAATGTGGGGAAACATTCCCCAGCGAAGAATCACTACAGAGCCACAAACAAGAAAACCACAATGAAGATCAGTTCAAATGTCTTGAAtGCAACAAAACGTTTTCAAGTCAGTCGTCGTTCGACATCCACCACCAGCGCGTGCACCTGAACGTGCGCTGGCGCAAGAAGAGcgagcgcgccgccgccggcgcccGCGGGGAGCGCGGCCCCCGCCACGGAGCGCCCGGAGCACCCGGAGCACCCGGCGCGCCCCGTAAGAGGGAGGCCGTCTGCGAGACATGTGGGAAGACCTGCGATTCGAACGCGGCGCTGGTGTATCATCAGCGGCAGCACACCGGCGAGCGCCCCTACAAGTGCACGCAGTGCCCCAAGAGCTTCACCATGCCTCAGGCTTTAATGACCCACCAGCTGGTGCACTCTGATGAACGTCCGTTCATGTGCAGCGCGTGTCCCAAGACGTTTAAAGCGAAAGTTTCACTGCAACTGCACAGTCGGGTTCACACAGGAGAGCGTCCGTACAAATGTTCCCTCTGCGATAGCAGCTTCAAGCAAGGACCGCATTTGAAAACACACATCAAACTGATGCACCACATGCAGGAGAAACGTCGACCCAAGACGAGTGCActctaa
- Protein Sequence
- MGCRCCLATDVKLLNIYENRLADVYVELTGISVLAEDGFPQHLCSYCRGLLLKYAAFRNRCLRAQAVLQTEMGHHQITTEYISTIDRFAHRLMLNLKTEETKIVDTTDFKENLIEEIKKETSDIELENIFIDPEELKMECDLKDKSLNDTVDDFSDDNLEHIFVATKPAKKEKKMRKIRRRLKKESHKKIRRRLPNNDFLPDFDIVTFENSYCVEIVTLTKEQQLEEIEARKKSSNYHYAAYKCDHCGKGFRAEPAFRNHMIRHSPSMGPHPCEICGVRFRQQCRRQEHQDLHRLKLICKKCEFVSRTRYQAKKHFEFHTGKTHICKHCGASFPKSSTYLSHVRLQHPAKNVACDECGESFVGRLGLLQHQSRAHQKNPNNQRDLTCAVCEVLFDTPEALDRHTDISNNACSDMRPCKQCGETFPSEESLQSHKQENHNEDQFKCLECNKTFSSQSSFDIHHQRVHLNVRWRKKSERAAAGARGERGPRHGAPGAPGAPGAPRKREAVCETCGKTCDSNAALVYHQRQHTGERPYKCTQCPKSFTMPQALMTHQLVHSDERPFMCSACPKTFKAKVSLQLHSRVHTGERPYKCSLCDSSFKQGPHLKTHIKLMHHMQEKRRPKTSAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -