Pcas004818.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149046.1:18004607-18011385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 7 7.7 0.7 2 23 285 306 284 306 0.96 2 12 0.00052 0.03 15.2 2.8 2 23 314 335 314 335 0.97 3 12 2.4 1.3e+02 3.7 0.5 1 19 339 357 339 361 0.84 4 12 5.1e-06 0.00029 21.5 2.8 1 23 366 389 366 389 0.98 5 12 0.006 0.34 11.8 0.1 3 23 399 420 398 420 0.95 6 12 1.2 70 4.6 0.0 2 19 429 446 428 449 0.91 7 12 0.044 2.5 9.1 0.0 3 23 462 483 461 483 0.91 8 12 1.7e-05 0.00098 19.8 0.8 1 23 488 511 488 511 0.94 9 12 1.1e-05 0.00064 20.4 0.2 3 23 540 560 539 560 0.98 10 12 0.00013 0.0072 17.1 0.2 1 23 566 588 566 588 0.94 11 12 0.021 1.2 10.1 2.1 2 23 595 616 594 616 0.96 12 12 1.4e-06 7.8e-05 23.3 1.5 1 23 622 645 622 645 0.96
Sequence Information
- Coding Sequence
- atgaCCACAGTCAAAGTGGAAGTGGATTCGGAGGAGTTGCAAGCGTGTCGTATTTGTCTCTCAACGGATATTAAATTGTACAGTATCTATGAACATCGCCTGGACGAGGCATTTGTGGAACTAATGGGTACCTCGttatcaGTGTGGGATGGCCTGCCGCAGCACCTATGTACTTTCTGCCGGAGTCAGCTTCTCAAGTGTTCCAATCTCCGGGAGAGGTGTCTGCGAGCGCAGGACCTCCTCAAACAAGCCTTGTTGCATCAAAGCTTTATATCAactgacttcgtccgcgcagTGGATCGTACAACAAACCAGCTGAATTACAACCTCACAATACATTTACTGAATAATATAGAAGAGTACACACACAATGAGACACACAGTGAATGTCACACAGAACCTTATGCTGATTACCCAGAggacaaacaaataaacaatgaaaCTCTAAATCCAACTTACAATGACGATGATGCACATGACTTTGATATTGAAGATGTACTTATAAAAGACGATGTAGAATCGGAAGAGAAAGATATCAAAACAATATCAAACGATGACGATGACGACATACCTCTAAAAATACTAAAGATGCggcctataaaaaaagaaattgtagaacatgtaaaaaaagaaaaaatacctaaaaaggTCAAAACGAGAAAAGTAACTAAAGGAGAGAAAGCGCAATTTACAAGGAAAAAGAAAGGGTTTAAGCGATTCTTCAGTTGTGAAGAGGATTATGTTAAATtcgaattaaattataatattagtatagtgaAGGTGAGCGAGGAGGAGCAGAAGAAGGAAATGGAGAACCGCAAGTTGTCGGCGAACTACGCGCGCGCGCACCTGCGCTGCGACAAGTGCTACAAGGGGTTCCTGTCGGACGCCACCTTCGAGAACCATCAGAAAGTGCATGATCCTAGCATGGGCGCGAACGAGTGCCAGCTGTGCCAGGCGCGCTTCAAGCACCCGACGCGGCTGCGGCGGCACATGGAGACGCACACGCTCAAGTTCATGTGCAAGCTGTGCCCGCTCGTCACCAGGCACCGAGGAATGGCCATGATGCATTCAGACTTCCATTCCGGAAAGACATTCGAGTGCAAATACTGTGGACTCACCTTcaaAAAGAAGACTACGTTCAACACGCACATCCGCGTGCAGCACCCGCTGGAGAACGCGTCGGGCGGCGCGTGCGACGTGTGCGGCGAGACGTTCATCGGCCGCCGCGGGCTCATGCAGCACAAGACCATGGCGCATCGGAAGTTGCCGATCCCCGAGCTGAAGTGCTCGGCGTGCGGGGTGCAGTTCGAGAACCTCGACGCCGTCGTGCGCCACGCCGCCTCCGCGCCCGCGCGCCGCTGCGACCCCGCGCTCCGTGCGTGCGCGCAGTGCGGCGAGTCGTTCCCGGACGAGGCGCGGCTGGCGGCGCACGCGCTGCTCGCGCACGTGGCGCCGCGCCACAGCTGCGACGAGTGCGACAAATCTTTCGCTACGAAGTCGTCGCTCGGCACGCACGTGGACCGCGTCCATCTGAAGATCAAGCCGAAGAAGACGGGTTTCTACAAGTACCACCTGTACCCGAAGAAAATGCAGAACAAGCGCATAGAGGAGATATGCGAGATCTGCGGGAAGGGATACCCGAGTTCAACTTGGCTTAAGTATCATCAGCGAACGCACACTGGTGAAAGACCGTACAAATGTTCAGAATGTCCAAAAAGTTATATGACTCCTGCCGCCTTACAGAGCCATTCAGTGTCTCACACCGGCGTGAGAAGATGGCAGTGCTCGCAGTGTCCCAAGACCTTCCTGCACCAGTCTTCAATATACAAACACAAACTGGTACATACTGGCGAGAAGCCGTTTGAGTGTCACATCTGCAACAAGTCGTTCACGCAGTCGGGCTCGCTGGCGACGCACGTGAAGTACGTGCACATGAAGCTCAAGCCGCCGCCGAGGAGGCGCCGCCGGGATGACGTCACACACTGA
- Protein Sequence
- MTTVKVEVDSEELQACRICLSTDIKLYSIYEHRLDEAFVELMGTSLSVWDGLPQHLCTFCRSQLLKCSNLRERCLRAQDLLKQALLHQSFISTDFVRAVDRTTNQLNYNLTIHLLNNIEEYTHNETHSECHTEPYADYPEDKQINNETLNPTYNDDDAHDFDIEDVLIKDDVESEEKDIKTISNDDDDDIPLKILKMRPIKKEIVEHVKKEKIPKKVKTRKVTKGEKAQFTRKKKGFKRFFSCEEDYVKFELNYNISIVKVSEEEQKKEMENRKLSANYARAHLRCDKCYKGFLSDATFENHQKVHDPSMGANECQLCQARFKHPTRLRRHMETHTLKFMCKLCPLVTRHRGMAMMHSDFHSGKTFECKYCGLTFKKKTTFNTHIRVQHPLENASGGACDVCGETFIGRRGLMQHKTMAHRKLPIPELKCSACGVQFENLDAVVRHAASAPARRCDPALRACAQCGESFPDEARLAAHALLAHVAPRHSCDECDKSFATKSSLGTHVDRVHLKIKPKKTGFYKYHLYPKKMQNKRIEEICEICGKGYPSSTWLKYHQRTHTGERPYKCSECPKSYMTPAALQSHSVSHTGVRRWQCSQCPKTFLHQSSIYKHKLVHTGEKPFECHICNKSFTQSGSLATHVKYVHMKLKPPPRRRRRDDVTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -