Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149044.1:12939437-12943000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.1e-06 0.00023 21.8 1.7 1 23 210 232 210 232 0.98

2 9 3.9e-08 2.2e-06 28.2 1.6 3 23 240 260 238 260 0.98

3 9 0.00013 0.0076 17.0 0.3 1 23 266 288 266 288 0.98

4 9 1.4e-05 0.00082 20.1 1.7 1 23 294 316 294 316 0.99

5 9 3e-05 0.0017 19.1 1.7 2 23 499 520 498 520 0.96

6 9 3.8e-09 2.2e-07 31.3 1.6 1 23 526 548 526 548 0.98

7 9 0.0032 0.18 12.7 0.6 3 23 556 576 554 576 0.97

8 9 8.3e-05 0.0047 17.7 1.5 1 23 582 604 582 604 0.99

9 9 0.026 1.5 9.9 0.8 1 23 610 634 610 634 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.1e-06	0.00023	21.8	1.7	1	23	210	232	210	232	0.98
2	9	3.9e-08	2.2e-06	28.2	1.6	3	23	240	260	238	260	0.98
3	9	0.00013	0.0076	17.0	0.3	1	23	266	288	266	288	0.98
4	9	1.4e-05	0.00082	20.1	1.7	1	23	294	316	294	316	0.99
5	9	3e-05	0.0017	19.1	1.7	2	23	499	520	498	520	0.96
6	9	3.8e-09	2.2e-07	31.3	1.6	1	23	526	548	526	548	0.98
7	9	0.0032	0.18	12.7	0.6	3	23	556	576	554	576	0.97
8	9	8.3e-05	0.0047	17.7	1.5	1	23	582	604	582	604	0.99
9	9	0.026	1.5	9.9	0.8	1	23	610	634	610	634	0.95

Sequence Information

Coding Sequence: ATGTTAAAAAACACGATCGCACATTGCAAAGATACGACAGCGCCGTACGTACTATACAAGGATGGCGTGGAGCGCGCCCCGCCAGGTACACAATGGGGAGGGGGCGTCCTCGATGGCAGCTATCAGCCCATGCAGCACCAGAGCCCGGGAGGGCCTTCGCCACAGCCCGAGCCCCAGCTCGCCTCCCCGGCGCCTTCGCCGTATCCCCCTGCGCCGCCACCACCAGATCAGTCTACCGATGACGCAGCTCAACAACTGGCGCAACAACAGGCCCAGCAACAGcagcaacaacaacaacagACCTCCCCCGAGCATATGCAAGTGGAACAGCAGATGCAGGCTCAGACGCAGCCAACGCAGGATCACTTAGATAGAACGACTTGCTTTATACCGCAACCTGACTTACAACAGCAGTACACGCCCTACTTCAAAGAGACCCGACCGGCAAGTCACATGCTCGGTACAGGAGGTTTTCCGCTACACTATCTTAAACAGAATGGCGGCGTGCTTTCGCTAGAAGGCCCCCTTGACCAGTACGGCGCGCCCGAGCTGCGGCACCTACCCGACATCGTGCAGCCCGAGCAGCCCAAGCCTCGCAAACACAACCCAAACTCAGAGCTACGACTGTTTAAGTGTCTGACGTGTGGCAAAGACTTCAAGCAAAAGTCGACTCTGCTGCAGCACGAGCGCATCCACACGGACTCGCGACCTTACGGCTGCCCCGAGTGCGGCAAGCGGTTCCGCCAGCAGTCCCACCTGACGCAACATCTCCGCATCCACGCGAACGAGAAGCCCTACGCGTGCGTCTACTGCCCGCGCTCCTTCCGACAGCGTGCGATCCTGAACCAGCACCTGCGAATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATGTCCCTCCCCCATCCCCGCAAGCGCCGCCCGCACTAACTCGAGCTCCTCGAGTCACTGCTGGCGCCGCGAGCGATCCCCGCCGCCCCCTGCACGTTCGACTCGGTCTCGCATCCATTGGCCTTCCTATCAAACAAATTCTCGGTCCCCTCGTCGCCCGACTAGCAGAGGGCGCTCGCGAGACGCGTAACCGATCTCCGGACGCTCCTGTAACCGTCCTCAACGTTTCGCCGCACCTGATCTTCAAGAATGGGACAACGCCGACCTTGTGGCCTCAAGATGTACCGTTTCCCCCAGATGAGGGAAAGGAAGAAGTGCAATCAACATTTGGCGATGACGGACAGAACGGGGAACAACGTGGATCCTGCTTCTCACCAGGCGATACAGCGCAGTATCCTGCATACTTCAAAGACACCAAGGGCCTCAATCACACGGTTTTTAGCTCAGGGCTCTCTTTACAATACCTTAAAGGAGGAAAGTTACCCGACGTGCTAGGTGGTCGAGCTATGCCACTGTACGTACGCTGCCCTATTTGTCAGAAAGAGTTTAAGCAAAAATCAACCTTGCTCCAACACGGTTGTATACATATAGAGTCTCGACCGTATCCTTGCCCAGAATGTGGCAAGCGTTTCAGGCAGCAGTCACATCTGACACAGCACTTACGAATCCATACAAATGAAAAACCTTATGGGTGTGTTTACTGTCCACGGTTCTTCCGGCAAAGGACGATCCTAAACCAGCACCTCCGTATTCACACTGGCGAGAAACCATATAAGTGCACTCAATGTGGAAAGGATTTTAGACAGAAGGCCATCCTAGACCAGCATACGCGGACGCATCAAGGAGATAGGCCATTCTGTTGCCCGATGCCAAACTGTCGGCGGCGTTTCGCGACAGAGCCCGAGGTGAAAAAGCACATCGATAACCACATGAATCCACATGCGGCAAAAGCACGGCGAGCGGACACCAACAAGACGCCACGACCGCTGCCTCCAGCTGCCGCGGTAGTCAAACCCGAGTTGTACTTCCCACCATGCTACGCGCCACCGTTCCAACAGTTTCCACCGCCGAGTAGCGCGACTGAGTTTAAGCCGAACGTGGGCCCGGGCGCGCCAGTGTCGTGTCTGCCGGCCCAGTGA
Protein Sequence: MLKNTIAHCKDTTAPYVLYKDGVERAPPGTQWGGGVLDGSYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDQSTDDAAQQLAQQQAQQQQQQQQQTSPEHMQVEQQMQAQTQPTQDHLDRTTCFIPQPDLQQQYTPYFKETRPASHMLGTGGFPLHYLKQNGGVLSLEGPLDQYGAPELRHLPDIVQPEQPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYVPPPSPQAPPALTRAPRVTAGAASDPRRPLHVRLGLASIGLPIKQILGPLVARLAEGARETRNRSPDAPVTVLNVSPHLIFKNGTTPTLWPQDVPFPPDEGKEEVQSTFGDDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFSSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADTNKTPRPLPPAAAVVKPELYFPPCYAPPFQQFPPPSSATEFKPNVGPGAPVSCLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078408;
90% Identity: iTF_00888518;
80% Identity: -