Pcas021350.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149065.1:4227010-4230899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.036 2 9.4 5.6 1 23 10 32 10 32 0.98 2 17 0.041 2.3 9.2 0.1 2 23 58 80 57 80 0.96 3 17 0.019 1.1 10.2 0.2 2 23 103 125 102 125 0.94 4 17 0.00037 0.021 15.7 0.2 1 23 130 153 130 153 0.96 5 17 0.29 17 6.5 2.6 1 23 158 181 158 181 0.86 6 17 0.58 33 5.6 0.1 2 23 187 209 187 209 0.95 7 17 0.0013 0.076 13.9 6.1 1 20 216 235 216 237 0.95 8 17 8e-05 0.0045 17.8 1.8 1 23 274 297 274 297 0.96 9 17 0.076 4.3 8.4 0.1 2 23 324 346 323 346 0.92 10 17 0.075 4.2 8.4 1.0 2 23 369 391 368 391 0.93 11 17 0.0012 0.069 14.0 0.1 1 23 397 420 397 420 0.94 12 17 0.00011 0.0061 17.3 1.2 1 23 426 449 426 449 0.96 13 17 0.011 0.62 11.0 0.3 2 23 455 477 454 477 0.93 14 17 0.0026 0.15 13.0 0.8 1 23 484 507 484 507 0.93 15 17 0.00053 0.03 15.2 0.5 1 23 513 535 513 535 0.93 16 17 0.0036 0.21 12.5 3.9 1 23 541 563 541 563 0.98 17 17 2.3e-06 0.00013 22.6 0.9 1 23 569 591 569 592 0.96
Sequence Information
- Coding Sequence
- ATGCCTTTCCGGAGATATGGGAATATTTATAGGTGCTTCTTCTGCCATACCAGCTTCCATCTCGCGAGTGACCTGAAGGAACATTCCAGAGAACACGTAAACGCAAACATAAGCCAGAGTGTTTCTAAATGTGTCACGCAACACTCAGTGAAACTAGACATTGCAGATTTAAAATGCAAACAATGTGAATATAACCTCGATTCGCTCGAGGATTTGATCTTACATCTTAATATAGACCACAGCAAAAACTGTCGGATAGACGATTTGAAATATATcatgtgttttaaattatccGACGAAGATTTGAAGTGTTTGATTTGCGATGAGAGTTTCTCATTTTTCGGGCCGCTGTTGCTTCATACGTTGAGGTTACATCGGCGTGATAGGTTCATTTGTGAGGATTGTGGCTTAAGCTTTGCTACTATGGGTAGTATAAATAGACATAAGCAAAGTTCCCACGCCACCGATACgtataattgtaaatactGCAATAAACAGTTCATAGCAGCACACAGGAGGGATGACCACCAGAAACGTATACATAACGTAGGGGAGAGAAAATGTCCTATATGCTTAAAAGTTCTAGGGAGCGCGTATAAAAAAGCTACTCATTTAGCGACTGCTCATAAAATCTGGTTGTCTGAATTTAAATGTGATATCTGCAGTAAAGTGTTCAGATTTCAACACCAACTTCATAAGCACAAACACCAGGACAGCAGCAATGAGCAAGAGATCAGAAAGAAAGAGCAACTGATTAGACTCCTTTCTGTTATTATTGAGAATTCCTCGGCGATTCCCTTCAAATGGTATTCCAACAAATACATGTGCTACTACTGCGGGTGCCCCTTCGACGACAGCGGCACTCTAAAGAAGCATACCCGAGATGAACACGAAGGAGCGAAGCTGAAAACAGTACTAAAGTCCACTCTGAATAAAAGCCATAGCATCAAATTTGACGTTTCCGATATATCTTGCAAAAAATGTACGAAACCAATCAGAAGCCTGGAAGAGTTCATCGATCATATTTCAGACATTCACAACATAAATATAGACAAAGACTGCAGCGAGTTTATCTATTCGTTTACATTGTCTGACAGCAAAATGTCCTGTTTAATATGCGGGATGACTTTTAGATTTTTCGGTCCTCTGTTAATCCACACCCACAAGTACCATAGCAAGACGAAATCTTACTTATGTGAGATCTGCGGACAGGGCTTCATAGCCAAATCGAACGTCGAGAGCCACAGGAAGAACGTACATTCAGATCTCTGCTCGTTTTCCTGCAAACAGTGCGATTTGAGTTTCCCAACGCAGTATAAACTAACTTTGCACTTCGAGACAGTTCATTCGCCCAACAAAATGAAGTGTCCAAAATGCCCTGAAGTTCTAAAGAGTAGATATTTGAAAAGGAGGCATTTAGCGCTAGTTCACGATGTTAAAAGTGTACAATTCAAATGCGACCAGTGTGATAAGGTTTTCGCTTTGAAGAATAGAATGTTACGCCATAAACAGGGGGTGCATTTGAAGGAAAAGAATTTTGCGTGCGAAATTTGCGGTTTTAAAGTGTTCAGCAAGGACTTGCTGAAGAGGCATTTGGTGAAGCATGACGATTCGAGGCCGTTTGAGTGTGAATTTTGTAAGAAGACTTTTCAAAGGAAGAAAACGCTGGAGTTTCATACTAGGATACATACTAACGATAAAAGGTACCAGTGCAAGGAGTGTGGGCGCGCGTTTGTACAAGTTACTAGTTTGAAGTTGCATGTAAGAGTACATCATTCCAATGCTAACGATAGTTCGTGGACgtga
- Protein Sequence
- MPFRRYGNIYRCFFCHTSFHLASDLKEHSREHVNANISQSVSKCVTQHSVKLDIADLKCKQCEYNLDSLEDLILHLNIDHSKNCRIDDLKYIMCFKLSDEDLKCLICDESFSFFGPLLLHTLRLHRRDRFICEDCGLSFATMGSINRHKQSSHATDTYNCKYCNKQFIAAHRRDDHQKRIHNVGERKCPICLKVLGSAYKKATHLATAHKIWLSEFKCDICSKVFRFQHQLHKHKHQDSSNEQEIRKKEQLIRLLSVIIENSSAIPFKWYSNKYMCYYCGCPFDDSGTLKKHTRDEHEGAKLKTVLKSTLNKSHSIKFDVSDISCKKCTKPIRSLEEFIDHISDIHNINIDKDCSEFIYSFTLSDSKMSCLICGMTFRFFGPLLIHTHKYHSKTKSYLCEICGQGFIAKSNVESHRKNVHSDLCSFSCKQCDLSFPTQYKLTLHFETVHSPNKMKCPKCPEVLKSRYLKRRHLALVHDVKSVQFKCDQCDKVFALKNRMLRHKQGVHLKEKNFACEICGFKVFSKDLLKRHLVKHDDSRPFECEFCKKTFQRKKTLEFHTRIHTNDKRYQCKECGRAFVQVTSLKLHVRVHHSNANDSSWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -