Pcas021192.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149065.1:2625833-2642290[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.2 71 4.6 0.1 1 23 126 148 126 148 0.92
2 15 0.0022 0.13 13.2 2.8 1 23 248 270 248 270 0.99
3 15 2.4e-05 0.0013 19.4 0.5 1 23 276 299 276 299 0.97
4 15 0.0019 0.11 13.4 3.8 1 23 304 327 304 327 0.94
5 15 3.8e-05 0.0021 18.8 0.5 2 23 490 511 489 511 0.97
6 15 0.00018 0.01 16.6 3.1 1 23 517 539 517 539 0.99
7 15 0.41 23 6.1 4.5 1 23 591 613 591 613 0.96
8 15 2.5 1.4e+02 3.6 0.0 2 23 621 642 620 642 0.94
9 15 0.0029 0.16 12.8 2.1 1 23 648 670 648 670 0.95
10 15 0.00029 0.017 16.0 1.2 1 23 676 698 676 698 0.96
11 15 0.00043 0.024 15.4 3.0 1 23 707 729 707 729 0.99
12 15 0.00016 0.0089 16.8 0.6 2 23 776 797 776 797 0.97
13 15 0.024 1.4 9.9 7.4 1 23 814 836 814 836 0.96
14 15 1.4e-06 8e-05 23.3 0.7 1 23 842 864 842 864 0.98
15 15 6.5e-07 3.7e-05 24.3 3.1 1 23 870 893 870 893 0.98

Sequence Information

Coding Sequence
ATGGAGCAAAACATGAGTATAGAGATAGACCCGTTAAGCATATATGAGTACAACCCATATGCGATGTACCCGCACATACAATACCCAACGTACCCCACATACGATGTCAAAATTGAAACGTTAAACCAAACATACGCTAACCAAGTAACCCAACAAAATCACCAAGAGAATCAAACTAACCAAGTGAGCCAGAATAACCAAGAGAACCACATTAACCAAGAGGATAAGAGTAACCAAGAGAATCAGAGTAACCAAGAGAAAACGGAACCGCAAAATGAAACGAAGCCAGTCTTCGATTTGGGTATCGTCAAGAAGGAGAAAGGGAAGAAGAGTAACTATTGGTCGCAGAAGATAACGGATGAAAACTTTCCTTTCTACGCCTGTGCTCTATGTAACGTCAGCTACAAACTTCTAAGAGAGCTGGATTCCCATTTGGTAGACCACAAAGAACGAGTGACCAGCTACGATTTGAGAatgaagaataaattaaagaaGAAGCAGCTGAAGAAAGAACAGAAGAAAGCGAAGAAGTTGGCTaaagttaaatttgaaattgaaatCAAACCGGAAGATGGTTATATTGGTAGTGAGAAGGCTTCGGAGTTTAACGAAGCGCAGACTGAGGTTACCGAGTCTGGAGAGAAGTTAAATGAAGAGAAGCAAAGTGATGAGAAGCAGAGTGAAGAAGCGGATGCGCAGAATGAGAAAGAAGATGCTTATAATAAGGATATAGAGAAGATTTACAAGTGTTTTGCTTGTCAGAAGCAGTTTACACTTagttattatttgaaattgcATGTCAGGTCCCATACAGATGAGAAACCATACACTTGCAGTGAATGCGGACAATCGTTTATAACTGCGAGTAAACTCGGGAGGCACAACAAGAGAATACATTTGGCCATAAAATACACCTGTAGGATTtgctacaaaatatttacaagattcgAGTACTTAACAAGGCATTTTGACAAAAAACACGCCGACGACAAATTGGAGGGAGAACCGTatgattataacGCAATATTGCCGTATTTAAAAGAGCTAGAGGAGCAATTAAGAGAAAAGGCAGAGGCCAAAGAGGCCAAACCGAAAACGGAGGAGCTATGGACCGATTGGCCTCAAATAGAACAGCCCCACTTCTCCGCTGAGCCCGAAGACAAAAAAGACTTTTTGGACGACAAAAAGGACTTTACTCATACAATGAACCATTTGGATATTGTTATGGATGTTAAGgttgACGCGCCAGAAGAGACGGAAACTCAGGTAGAAATTAAAGTGGAAAAAGAAGAAAGTAGCAATGAAATGGACGTCAGTATGGAAGATGGAATGGACGACAATAATGATAATGTCAAAGATGAGAGCTTCTCAGATGAAGACTATTTTCCATCGAACACATGGACGGAACCCCCCCAAATGGGTTCACCGCCTTCCCCCTCGAGGAGGGTAAAGGCCGAGGGACCCCTGAAGTGCGAGATTTGTGAGAAAAGTATAAGTTCTTTGTCGTATATGAGGATTCATATGCGGacgcacactggagagaaacCATACAAGTGTTATATTTGCAATAGGGGATTTATAACGTCGAGCAAAATGCATCGACACGTGTTGACACACTCTGAGAGCTGGGATAaaGATGGTGTCAAAATGGAGGGTGTACAAGTGAAAGAGGAAAACGGCGAAGACGGTGACCACGAGGACGGTAAAGGAACGAAGAagaagcggaaaaagaagttGACAGAGAAGAAGAGAAGTTACCAGAAGAGACCGCACGCGTGCGAGTTCTGCCAGAAGAGATTCTTGCATCTAGAAATGTTGAATGTACATAAAAAATCGCACGAGGGCGAAGAAGCCGTGTTGAGGTGCTATTATTGCCTAGTTGACGTGGAGACGGAAGAGGCCCTAAAGGCGCATGAGGCCACGCACGATGGCCCCAAGCCCTTCTTGTGCACCTTGTGCGGGAAAATGTATAAACGAAGAGAGACTATGGTGTACCACAGGAAGAATCACAAGTCCGAGAAGAAGTTCATATGCGACATATGCTCGAAAACCTTCAACGCGCCCTGCAAGCTGCAACGGCACATAGTCTCCCACAGAGCGGACAAATACGTGCTCCGCTACGAGTGCCCCGTCTGCGCTCATATGTTCAACACGAAGTACCACGTTCAGATGCACCTCAACACGCACCAGAAGGAGGGGCTAATATTAGAAGAGAACAGAAGCGAGATACTGGCGATGGTGCTGCAGAACGCGCGCAAGATACCCAAGCAGGGAGACGCGCCGACCAACCTCGCCGACCTGATACCGGCGGACGAGCGCAGCCGCGTGTGCAACATATGCGGGGAGGTGTTCCAACACTTCTACTACCTAGAGGAGCATTTGAAGAGCCACGGCTCCCGAATAGCGATAGAAGATGAGAACAAACCGGAAGAAAGAAAACACACTTGCACAGTATGCAATAAGAGCTTCAAATTACACTACTATCTAAAACTGCATAGTTTTACGCACACGAAAGAAAAACCTTATATATGCCAGCAGTGCGGCAAGGGTTTCATCACAAAAGGTAAGCTAAAAAGGCATTTGGAAACGCACACTGgcctaaaaaaataccaatgtCATATTTGTTACAAGTTTTTCACTAGGCCCAGTTATTTGAGAATACACGTTAGGACGATACACGGGAATcaagattataattttaggGTAGGTAAAGAGTTTGGTATAGCTGCCCCTATTAATGCTCTGAATGTAATGAGTCAGTATAGTGAGTGA
Protein Sequence
MEQNMSIEIDPLSIYEYNPYAMYPHIQYPTYPTYDVKIETLNQTYANQVTQQNHQENQTNQVSQNNQENHINQEDKSNQENQSNQEKTEPQNETKPVFDLGIVKKEKGKKSNYWSQKITDENFPFYACALCNVSYKLLRELDSHLVDHKERVTSYDLRMKNKLKKKQLKKEQKKAKKLAKVKFEIEIKPEDGYIGSEKASEFNEAQTEVTESGEKLNEEKQSDEKQSEEADAQNEKEDAYNKDIEKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCSECGQSFITASKLGRHNKRIHLAIKYTCRICYKIFTRFEYLTRHFDKKHADDKLEGEPYDYNAILPYLKELEEQLREKAEAKEAKPKTEELWTDWPQIEQPHFSAEPEDKKDFLDDKKDFTHTMNHLDIVMDVKVDAPEETETQVEIKVEKEESSNEMDVSMEDGMDDNNDNVKDESFSDEDYFPSNTWTEPPQMGSPPSPSRRVKAEGPLKCEICEKSISSLSYMRIHMRTHTGEKPYKCYICNRGFITSSKMHRHVLTHSESWDKDGVKMEGVQVKEENGEDGDHEDGKGTKKKRKKKLTEKKRSYQKRPHACEFCQKRFLHLEMLNVHKKSHEGEEAVLRCYYCLVDVETEEALKAHEATHDGPKPFLCTLCGKMYKRRETMVYHRKNHKSEKKFICDICSKTFNAPCKLQRHIVSHRADKYVLRYECPVCAHMFNTKYHVQMHLNTHQKEGLILEENRSEILAMVLQNARKIPKQGDAPTNLADLIPADERSRVCNICGEVFQHFYYLEEHLKSHGSRIAIEDENKPEERKHTCTVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGNQDYNFRVGKEFGIAAPINALNVMSQYSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-