Pcas021246.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- bnc-1
- Assembly
- GCA_038024825.1
- Location
- CP149065.1:3468665-3474479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.9 51 5.0 1.9 2 21 116 135 115 136 0.86 2 25 0.049 2.8 9.0 0.9 2 23 167 189 166 189 0.95 3 25 0.0026 0.15 13.0 1.0 3 23 196 217 195 217 0.97 4 25 2 1.1e+02 3.9 2.8 2 21 221 240 221 241 0.83 5 25 0.0085 0.49 11.4 4.1 2 23 253 275 252 275 0.91 6 25 0.0029 0.17 12.8 6.2 1 23 282 304 282 304 0.97 7 25 0.0048 0.28 12.1 1.1 1 23 311 333 311 333 0.98 8 25 0.0004 0.023 15.5 0.5 2 23 360 382 360 382 0.94 9 25 1.1e-05 0.00065 20.4 0.2 1 21 486 506 486 507 0.94 10 25 4.4 2.5e+02 2.8 0.2 3 23 513 533 512 533 0.87 11 25 0.042 2.4 9.2 1.4 2 23 539 561 538 561 0.93 12 25 0.0015 0.083 13.8 0.2 3 23 568 588 566 588 0.97 13 25 4.2 2.4e+02 2.9 7.0 1 21 591 611 591 612 0.94 14 25 0.00028 0.016 16.1 0.6 1 23 624 647 624 647 0.95 15 25 0.00016 0.0091 16.8 0.8 1 23 653 675 653 675 0.96 16 25 0.79 45 5.2 0.3 1 23 709 732 709 732 0.85 17 25 0.00057 0.033 15.1 0.9 2 21 859 878 858 879 0.91 18 25 0.18 10 7.2 0.1 1 23 912 935 912 935 0.95 19 25 0.0002 0.011 16.5 0.2 2 23 941 962 940 962 0.96 20 25 1 60 4.8 1.7 2 20 966 984 966 986 0.92 21 25 2.3e-05 0.0013 19.4 1.0 1 23 1012 1035 1012 1035 0.95 22 25 0.0016 0.093 13.6 0.4 1 23 1041 1063 1041 1063 0.92 23 25 0.36 20 6.3 0.1 1 23 1069 1091 1069 1091 0.97 24 25 0.19 11 7.1 1.8 1 23 1097 1120 1097 1120 0.94 25 25 0.0028 0.16 12.9 1.4 2 23 1127 1149 1126 1149 0.96
Sequence Information
- Coding Sequence
- ATGGAGACGTCATCTTTGctgccaaataaaatatgcgaggaATGCGTCGCCTCACTCGAGCCGACCATCAACTTGATACAGACTTTGAAGGACACTCACAGAAAATGGCTCCACCTTACAAACTACCTAGATGACCTCGATTTCAAAGACAAAGTCAAGACAGCATACATAGAAATCGACGACGATGTGAAAGACATACAAGTTTGCACGGAAAAGAGAAGAATTGACCCAGAAATGGGAGTCTCTGAAGTCTTCAGAAgctataagaagaagaagaaagcGCAGATCGCTGCAAAAAGGCAGAATGAGATTAGAAAAGAGATGGAGAACGAAGTGAGTGACTTGAGATGCCCTGAATGTGATAAGTACTTTTACTGcgtgtataaatttaatatgcaCCTAAGGTCCTACGATAGCAGAGTCTGTATATATTGTCGGCAGATGGTTAAAGTTGAAGATTTGAAAGAACATTACGAGGAACATGGAATAGAGACGCTACAATGCGATGTATGTTTTGATACTTTTAAAACGTTGGAGAATTATTTGAAGCATAAACTCAAGGCTCATTCGGAGGAGTCGAACTTTTGCTATATTTGCAAGTTGTCTTATCGTGATTCTCAAAGTCTGGCGTCGCATATGACTACGAAGCACCAGCCGAGAGTCTGCGGTGGATGTAAGAAGAAGTTTACCAATTTGTACTGTCATAGGATTCACGCGCGTAAATGTAACAATTTCAAAGGTGTTAACTCTAGATGTATTTGTGATATTTGTTCAAAAGAATATTGCAATAAACATGCCTTGAAAGTTCATATTGAGTTTGTTCACATGAATAAGAGGTTCAGACACATGTGTGAGCATTGTGGGAAGTATTTTAATAGTGCTATGCATTTATTTGAACATAGCAACACACATAATAAAGTGTTGGATAGATATGTGTGCGACAAATGCAATATGCCGATGAGTACTAGAAGGGGTTACCAGAGGCATATAAAGAAACATAAGAACCCCGATTATGTGCCGCGGCGGCTCATAAGGTCGGATAAGCCGAAATTGCCTCCAAGAATTCGCGCAAAAAATGAGTGTCCGAATTGTGACGAAAAATTTCGACTGAAAAGGGAATTGCGGGAGCACATGACGAATGTGCATCaaGTCGCCGAGGAAGCGGGACTGCCGCACGGGATCTGTCGCCATTGCTCTGGAGAAGCCATCTCAGCGGCTTACTTTCGGCAGCTCTGCTCAGCATCAGCCCAACACTGGGATCATGTCAGCTCCACTCTTCTCCAGATCCACGACCCCTCAGAACACGCCAAGACATACTATATCCATTATAACCCCGAAGGTGACACGTTAGTCAAAGAAGAAATATACGAAGTCAAAAAGGAGAAAGTTGTTGAGAGATTAAACGTTTCCGAAAGGACTAAAAGGGTGAAAAGGATTTACACCAGGTCCGGGAAGTGTAAATGTCCGGATTGTGGCAAGGAATTTCCGGTTGCCTCTAATCTTAATGTACATTTGAAGAACACGATGAAACGGGCGTGTATGCATTGCGGGTTGGTTGTGGATAGGAGCAAACTAGCGTATCATTTGGCTGGTAAACACGAGAAATTCTTTTTGAACTGTGAAATTTGTCATAAACTTTTCTCCGACGATGTTGGGTTGCAGGAACACTACAACGCTTGTCACGGGAAATTTTCGTTTGGGTGTCAGATTTGTAGCAGAGGTTATACGAATGAGAGAGCCTTGCGCGCACACATGTACGTACATACACTGTTTCACTGCGTTTCCTGCAATTTAAGCTTCGAAAACAGGCGATGCTACAAACATCATCAGAATAAATGCAAGCCGCCAAACCAACCACTAGATTCACACTTCAAATGTGATTACTGCGGTAGCGTGTACACCAAAAAACCGTCGCTTCGGATCCATATAATACAGAAACATTTGAACGTCCTTCCGTACGTTTGTCAGACTTGTGGCAAAAGGACTTCCACGTTAGCGCATCTTAGGTCACACGAGGCTGTGCATAAGAGTATAAGAAAGATTTTCAAGTGCTCTTGTGGAGCGGAGATGAGAACTGAACTTGGGTATAATTTGCACCAGAGAATTCACACTGGTGAGAAGAATTATGAGTGTGTCGAGTGTGGAGAGAGATTCCTATCTGCTTCTAGAAGATTGGATCATGTCAAAAGAAGACACAGAAGCACAAAAGACATGCCCCATGGATGTGACATATGTCACGCTCGCTTTatcGTCGAAGAACAATTATGCCCCCGAGGTATATGTGCCACGTGTACCACTAACGCTGTCGCCGTTCAGGAATTCAAGACCCTGGTCACAGACTCACACAAGATCTGGTCTCACACCGTGGACCAACTGGAAGCCCTGCCCTTTTCAGACGCCCCCGCAGTCAAATCTTTATGTGCCTTCATGCGATCAGACACTCTAACAGTCCAAATAGCAAAAGACTACGCCAATAACGATAAAACTACAGCTTTAAACAGACTAAAAACTAGGATGTATAAGAAAAAAGATTCCGAAAGAAAACCTAGGGTGCACAGGTCAGGGCCTCCCTGCAAATGTGTGGATTGTGGCAAAGAATTCATTAGtccttattatttaaatgttcattttaaaaacagtGGGCAGAAAGACGCGTGTTTGAATTGTGGTGAAATTGTTTTAAGGGGGAAAGAGATGAGAGATCATTTGATTAGGTATCATAGGGAAAACGCTTATGTTTGCAAAGAGTGTCCTGCTCTGTTTTTAAATGAGGTAGATTTGAAGAAACATGAGAAAAACGCGCACAGAAGCGGCGCGTTGACTTGTGGAGATTGTGGTAGGACGTTTCCAAGGACTGCGTCTTTTGAGGCTCATTCTCAAATGCATGCGGTTAGAACTTGTAGGTCTTGCGGGGTACAGTTCACAAATAGGGCGTGTTACAGAGAACATAGGTCCCAATGCGAACCTGACGCTAAACCTAATATACGAATGGTACCAAAAAGTAGAAGATCCAACATACGAGACCCGGCTACCTTTACGTGTGACTATTGCAAGAAAACTTACAACTCTAGGCCTCAGTTGAAAAATCATATATTATGGATTCATATGGATGTGCGACCTCACCAATGTCAGTGGTGTGGAAAGAGGTTTTATACTCCAGCTAGATTGGCTGAACATAGCGTTGTACATACGAGAGAGAGGAACTTTGAATGCGACCTCTGTGGTGCTAAATTGGTTTCCAAAATGGCCGCCGTGTACCATAGACGACGGCATACGGGCGAAAAACCTTACCGATGTGAGGACTGTGgcgattgttttatttctgcCTCCAGGAGGTCTGAGCATGCGAAAAGAAAACATGGAAAAGGGCCTAGGATACAGTGTACGCAATGTCCAGCAACGTTTGTAAGGATACATGAAATGAGGAAGCATTTGCAGAAATCGCACAGTAATATTATCGTTGAAGTTGTTTGa
- Protein Sequence
- METSSLLPNKICEECVASLEPTINLIQTLKDTHRKWLHLTNYLDDLDFKDKVKTAYIEIDDDVKDIQVCTEKRRIDPEMGVSEVFRSYKKKKKAQIAAKRQNEIRKEMENEVSDLRCPECDKYFYCVYKFNMHLRSYDSRVCIYCRQMVKVEDLKEHYEEHGIETLQCDVCFDTFKTLENYLKHKLKAHSEESNFCYICKLSYRDSQSLASHMTTKHQPRVCGGCKKKFTNLYCHRIHARKCNNFKGVNSRCICDICSKEYCNKHALKVHIEFVHMNKRFRHMCEHCGKYFNSAMHLFEHSNTHNKVLDRYVCDKCNMPMSTRRGYQRHIKKHKNPDYVPRRLIRSDKPKLPPRIRAKNECPNCDEKFRLKRELREHMTNVHQVAEEAGLPHGICRHCSGEAISAAYFRQLCSASAQHWDHVSSTLLQIHDPSEHAKTYYIHYNPEGDTLVKEEIYEVKKEKVVERLNVSERTKRVKRIYTRSGKCKCPDCGKEFPVASNLNVHLKNTMKRACMHCGLVVDRSKLAYHLAGKHEKFFLNCEICHKLFSDDVGLQEHYNACHGKFSFGCQICSRGYTNERALRAHMYVHTLFHCVSCNLSFENRRCYKHHQNKCKPPNQPLDSHFKCDYCGSVYTKKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLRSHEAVHKSIRKIFKCSCGAEMRTELGYNLHQRIHTGEKNYECVECGERFLSASRRLDHVKRRHRSTKDMPHGCDICHARFIVEEQLCPRGICATCTTNAVAVQEFKTLVTDSHKIWSHTVDQLEALPFSDAPAVKSLCAFMRSDTLTVQIAKDYANNDKTTALNRLKTRMYKKKDSERKPRVHRSGPPCKCVDCGKEFISPYYLNVHFKNSGQKDACLNCGEIVLRGKEMRDHLIRYHRENAYVCKECPALFLNEVDLKKHEKNAHRSGALTCGDCGRTFPRTASFEAHSQMHAVRTCRSCGVQFTNRACYREHRSQCEPDAKPNIRMVPKSRRSNIRDPATFTCDYCKKTYNSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFECDLCGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRIQCTQCPATFVRIHEMRKHLQKSHSNIIVEVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -