Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149045.1:10233655-10240281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00012 0.0071 17.1 0.9 1 23 138 160 138 160 0.98

2 28 0.045 2.6 9.1 0.3 2 21 195 214 194 215 0.92

3 28 4e-05 0.0023 18.7 0.3 3 23 249 270 247 270 0.96

4 28 0.0006 0.034 15.0 0.7 1 23 321 344 321 344 0.95

5 28 0.093 5.3 8.1 0.1 1 23 367 389 367 389 0.96

6 28 7.5e-05 0.0043 17.8 2.3 2 23 426 447 425 447 0.96

7 28 0.00045 0.026 15.4 2.3 2 23 486 508 486 508 0.97

8 28 0.0019 0.11 13.4 0.7 1 23 558 581 558 581 0.95

9 28 0.00048 0.028 15.3 0.2 1 23 637 659 637 659 0.97

10 28 0.0067 0.38 11.7 5.9 2 23 671 692 670 692 0.97

11 28 0.044 2.5 9.1 1.8 2 23 704 725 703 725 0.96

12 28 0.004 0.23 12.4 1.0 1 23 735 757 735 757 0.98

13 28 0.00084 0.048 14.5 7.6 1 23 785 807 785 807 0.97

14 28 0.0074 0.42 11.6 2.7 1 23 818 840 818 840 0.98

15 28 3.4e-05 0.0019 18.9 0.5 1 23 848 870 848 870 0.97

16 28 0.00069 0.039 14.8 0.1 2 23 890 912 889 912 0.97

17 28 1.1 64 4.7 0.9 1 23 930 952 930 952 0.91

18 28 0.17 9.9 7.2 4.6 1 23 959 981 959 981 0.98

19 28 0.011 0.6 11.1 0.6 2 23 992 1014 991 1014 0.95

20 28 0.00081 0.046 14.6 0.3 1 23 1036 1058 1036 1058 0.97

21 28 0.0025 0.14 13.0 0.2 2 23 1139 1160 1138 1160 0.92

22 28 1.2 67 4.6 4.7 3 23 1168 1188 1166 1188 0.96

23 28 0.017 0.95 10.4 0.8 2 23 1199 1221 1198 1221 0.95

24 28 4.2 2.4e+02 2.9 6.1 2 23 1238 1256 1238 1256 0.89

25 28 0.14 7.7 7.6 1.3 2 21 1260 1279 1260 1280 0.93

26 28 1.3 75 4.5 2.2 2 23 1328 1349 1327 1349 0.93

27 28 0.0033 0.19 12.7 0.7 2 23 1360 1382 1359 1382 0.94

28 28 4.7 2.6e+02 2.8 3.2 2 19 1420 1437 1419 1440 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00012	0.0071	17.1	0.9	1	23	138	160	138	160	0.98
2	28	0.045	2.6	9.1	0.3	2	21	195	214	194	215	0.92
3	28	4e-05	0.0023	18.7	0.3	3	23	249	270	247	270	0.96
4	28	0.0006	0.034	15.0	0.7	1	23	321	344	321	344	0.95
5	28	0.093	5.3	8.1	0.1	1	23	367	389	367	389	0.96
6	28	7.5e-05	0.0043	17.8	2.3	2	23	426	447	425	447	0.96
7	28	0.00045	0.026	15.4	2.3	2	23	486	508	486	508	0.97
8	28	0.0019	0.11	13.4	0.7	1	23	558	581	558	581	0.95
9	28	0.00048	0.028	15.3	0.2	1	23	637	659	637	659	0.97
10	28	0.0067	0.38	11.7	5.9	2	23	671	692	670	692	0.97
11	28	0.044	2.5	9.1	1.8	2	23	704	725	703	725	0.96
12	28	0.004	0.23	12.4	1.0	1	23	735	757	735	757	0.98
13	28	0.00084	0.048	14.5	7.6	1	23	785	807	785	807	0.97
14	28	0.0074	0.42	11.6	2.7	1	23	818	840	818	840	0.98
15	28	3.4e-05	0.0019	18.9	0.5	1	23	848	870	848	870	0.97
16	28	0.00069	0.039	14.8	0.1	2	23	890	912	889	912	0.97
17	28	1.1	64	4.7	0.9	1	23	930	952	930	952	0.91
18	28	0.17	9.9	7.2	4.6	1	23	959	981	959	981	0.98
19	28	0.011	0.6	11.1	0.6	2	23	992	1014	991	1014	0.95
20	28	0.00081	0.046	14.6	0.3	1	23	1036	1058	1036	1058	0.97
21	28	0.0025	0.14	13.0	0.2	2	23	1139	1160	1138	1160	0.92
22	28	1.2	67	4.6	4.7	3	23	1168	1188	1166	1188	0.96
23	28	0.017	0.95	10.4	0.8	2	23	1199	1221	1198	1221	0.95
24	28	4.2	2.4e+02	2.9	6.1	2	23	1238	1256	1238	1256	0.89
25	28	0.14	7.7	7.6	1.3	2	21	1260	1279	1260	1280	0.93
26	28	1.3	75	4.5	2.2	2	23	1328	1349	1327	1349	0.93
27	28	0.0033	0.19	12.7	0.7	2	23	1360	1382	1359	1382	0.94
28	28	4.7	2.6e+02	2.8	3.2	2	19	1420	1437	1419	1440	0.87

Sequence Information

Coding Sequence: ATGGAGGTTTTGGTGTTTGAAGGGAAGggaacaaaacatttttttgagaTTTGGAGGTTTTTGACTTATCGAGGTTTCAGCACCTCTCCTCCTCCTACCAATAGACAAAGCAGCGACTCTACTCTATCACTGCACACTGATATCTCTAATCAAACGAAATTCTGTTCAACCTCAGAGTTTACACCTTCTAAAAGATCTTCCCGCAAACGCAGTCATGAAAGTGTAGGAAATACTTCTACCAGCGGTAAATCTCAAGAAATTAGGGCTACCACCTCCAAACGCGTAGAAGAGCTTAGAGGCGCTCCAAAAAAAAAGAGgatacaaaattattacttagaTTCAGATTACGAAGACAACAGCCCCTCCCATATTTCAGCAACGGATTCTGAcgaacctattttaaaaaacgaaCACAAGTGTAAAGTCTGCGACAGGATCTTTGCGTCGGCAAAGAGTTTAGCTTCCCATTCGAGAATCCATTCTCGCACTAATAACAAGGTGAAGGACGTTCTTACGGAAAACGTCGTAGTTGATATTCCAAAAGATAATTTGCAAGACGCCACTGACGTGGATGATAAGCTGAGTTGTGACAAATGTGGAAAatggtttaaattaaaaataatgttaaagcGACATCTCGAATCGTGTGGAAAATCACCTCAAAAATTACCACCAAAACCAATTCAGAAGGAGTTATTCATATCCTTAGAACCCATTGATGGTATTCAAAGCAAAAAAATTGATTGTGATATGTGTTCAACAAAGTTCAAAACAATCGAAAACTTAGAGAAACACATGAGGGTTGTCCATGCAGCAGTTCTTAAGAAAGAAAAGTATGAGCCCAAACTTGATAAGAGTAAAGTGTCTGTTCCTTGTTTATTCTGCAAAAAGCAGTTTGATGATTATTATGTTCATAGTGAACATTTTAATAAGTGTTCCGATAGCAAAAACTATTCGACTTTTGAATGTCCTGTATGTAAGAAAATAACAACTAAGAAGGCATCTTATTTCCGTCACATTAAGGATGTGCATTTTGAACCTAGAATGTGGGCAATGAAGACGGAAACGCAGTCTGTATCCAGTGCAAAACCGCAGTACTTTGAATGCAGAGTCTGTAGTAAGAAATTGGCCAGTGAACAGTTGCTCATCACTCATCTTGCAGCACATATGTCCAACATTGAGGGAACAGATGAAGTGGCTGATGAAGAATCTAgACCAAGCACTATTGAAGATTCTTCATCAATGCTTTCTGAGAACAGTGGCCAAGGCCCTTTACAATGCAACTACTGTGACAAAAGGTTCAAATATAAGAAATCTCTGGTGTCACATGAACTAAAACATTCCCAAAtggaaattgaaattaaaactgaAACGGAAGACAATCCATGTGGCAGCTTGCTAAATGAATCTTATCGCGACGAGTCTGAGTCTAGTCAAGAGGAAGGTGATGATAATACATGCGATATATGTGAAAAACAGTTCTCTTACAAACGGCTCCTACTCCAACATAAACGCACTAAACATAACATGAGCTCAGGTACGAAACGAGCTAAAATCAACCTCAAGGACTGCTTAGTTCGATGTCTTATATGCGATATCGAAATGAAAGTTGGAGCAGTGAATGAACATAATCAAATTcatattaatttgaatatgaAACCAAGAAATATGTACACTTGTATTGATTGCGGtgaaaaatttaaaagctGTACCGCATTAGCTAATCACATTAAACTAGTACACAGATTAAAACAGTTACCACCCCAGCAGTTTGCAAGTGCGGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGATGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGAAGCAAGAGGGCTCACCGTTAGTAAATCTGAGCGGATTCAACTGCACGATTTGCGGCAAGACTATGCCAACTCTGATATCCCTGAAGCGACACATTAATTGGCATTCTAACGTTGGTAACAATTTAGAAAAGAAACTAGAGTGTTTCGTATGTAAAGAAACATTTCGGTTCCAATGCCACTACAAGCTACACATGCGGGTACATTATCGTGATACTAATCTCGATCCTACCCTTCTGACTTGCACCATATGCAATCGAAAAAGTAAACATTTGCGAGCAGCTCAAGCTCATATGAATTATCATAAACAAACACGATTCAAGAACAAAGACTATCAGTGCTCTATTTGCAAGCGGGTTTTCCAGTATCGTAAGGTATACCTGTCCCATATGGCTATTCATTTCAAACGCGGTGAGAGTCAGAATACAATTGTAGGGGATGTATTACCTAATACCGCAGATAAATCTGTGTTTGATGGAACACATACATGCCAGCACTGTGGAAAGGTTTGTGACTCTGAAAGTTCTTTAAAGCATCACATGTCTTGGCACAAATCCAAAACTTTATTATTCGGCGCTCGACATGAGTGCCCTATTTGTAAAGTAATGTTTACTAACAAAAAGAGACAAGAATTACATACAAGAACTCATTATGAAGATGAAAATGGCCCGTTTAAATGCACAATATGTGGCAAAGGCTATATAGACGAAGATTATTTTAAACGACATGTAAAGGGGCATAATTTTGACCACCAATCTCACAAAAAGCGAATTGAAAAACTAAGAAAAGATAAAGTAAAATGTCCTATCTGTGTTCGATACTATCCAGACTGGGTGAAACTTATAAGGCATTTAAGGAGAACTCATCCGGAGAGCAAAATGATTAAGGAAGATCCAGATGCTCCCCCAAAGACATTTTACTCTTGTAAACTGTGTGCTAAGGTGTTCCTAGACGAGCGCCGATTGCAACACCATGAAGAGGCCCATCTGAGAAAACCAGAGTTCTTTAAATGCAAGTTTTGTGGGAAGAAAACCATCTCACTTAAAAATCACAACCTCCACATAAAATCACATTTGACATCGAAACATATTGATAATCCTCTCAAATGCCCTCAATGTGaggaaacatttataaaaggGTATGATTTACATTACCATTTGCGAGATGTACATAACACTAACGAGACGTGGATTGCGGAGCGAACCGAGCAGACTTTGAATGGTCCATTAAAGGAATTTCAATGTTCGATATGTCTTAAAGTGCTTGCCAGCAAAGGAAATTATGAGAGGCATATAGATTATCATAATTCATTGAGGTGCAATTACTGCTATGATTATTTCAGTTCTTTGCGTTTCTTAGAAGGGCATTTAAAATTCAGCTGTGATAAGAAAAAGCTAATTGGGGATACGGAAATATACCCTAGGAAGATAAAATGCTATGTTTGTTATAAAGCATTTCATATTCAAGTTAAAATGGATTGCCATTTGCGGATAAGACATGGCATTAAGGTCTCCAAGGAAGCCTCAAAGAGTAAAAAGGACCTTGTGTGTGATTATTGCTTCAGGGTTTTCGAAAACGCAGATGCCTTGACTACTCATAAAGTTTACCACAGAACAGTTGGTTATTATGGTTGCTTATACTGTAAACGAAAATTTAATACACTGACAGTTTACAGGAAACATAAAAATCACCACTTTTCTCAGTTAAATGTGGACAATCCTACTAAGTGTGAGCACTGTGACGAAACATTTGTGgcatttagggaaatgatctATCACATGAGAGACGTACATGGTGATGATAAAGAATGGTTAGTAATGCCTAAAGAATCAATTGAAGAGACTTGCCACATATGTCAAAAAACATTCTTTAATTTACATAGGCATTTAGATTATCACGAAGAAAACAGATGTAAAAAGTGtggtgaatatttttattccaggGTTGATTTTGATAATCACCTTTGTGCCATCGAAAGTGATGAAGAGGTTGGAACACTTAAACAAGACTTGCGTCCAAAATATGAAGAATGCCGATTTTGCTTCAAACCAATTACTAGAAAAAGCTCAAAGCGGAAACATGATCATATTCATAAAGGTTCCGGATCTATATCCTGCAGATTCTGTTCACATAAATTTAAGACAATTGATGCTTTTAATATTCATGCTTTTTCACATAGAAGCAGGAAGTACAAAAAGAATCCGTTAAAATGCCAAAAATGCGGTGAAAAGTTCATTAAATATGGACCATTTATGAAACATATGAAAGATGTGCATAAATCGGTTCAAAAAATGCATTATCGAGCCACTGTCAGAGCCGAACGTTGTGTTGTGTGCGGAGATGATTTCCCTAACCTACACAATCACTACCGCGCCCATTTGGCGAACCAGTGCCAATCGTGTCACAAATTTTTTACTTCCGCCAAAGTGTTTTCACTACATGAGTGCGAAAAAGAAGACACCGATCCGACTAAAGTTTTCATATGCGAAGAAAACTTGCATTTACTAATCAATTCGTATGTTCCGAAGGATGAGCAAGATGAACAAAAGTATTATAGCCAAGAGACTGAAGAGGATTATATGAATAATATGCCAGAAATAAAAGACGACGAAAGTCAAAACTCTATGGAAAATGACCAATATCAATTACAGTCTCCGATTATATCGGACGTTCTTTCGTTGTATCAGAAGCAAGAACAGGTTGACGAGGTTGCTGGTGGCGGCGAGAGTGTCAACGGTGCGGTCGATAATAACATAATCGATTTATCAGATGACAGCTCTATTGGCGTGAGTGATGCCGTTTGCCCTATCATTACTATTGACGATTAA
Protein Sequence: MEVLVFEGKGTKHFFEIWRFLTYRGFSTSPPPTNRQSSDSTLSLHTDISNQTKFCSTSEFTPSKRSSRKRSHESVGNTSTSGKSQEIRATTSKRVEELRGAPKKKRIQNYYLDSDYEDNSPSHISATDSDEPILKNEHKCKVCDRIFASAKSLASHSRIHSRTNNKVKDVLTENVVVDIPKDNLQDATDVDDKLSCDKCGKWFKLKIMLKRHLESCGKSPQKLPPKPIQKELFISLEPIDGIQSKKIDCDMCSTKFKTIENLEKHMRVVHAAVLKKEKYEPKLDKSKVSVPCLFCKKQFDDYYVHSEHFNKCSDSKNYSTFECPVCKKITTKKASYFRHIKDVHFEPRMWAMKTETQSVSSAKPQYFECRVCSKKLASEQLLITHLAAHMSNIEGTDEVADEESRPSTIEDSSSMLSENSGQGPLQCNYCDKRFKYKKSLVSHELKHSQMEIEIKTETEDNPCGSLLNESYRDESESSQEEGDDNTCDICEKQFSYKRLLLQHKRTKHNMSSGTKRAKINLKDCLVRCLICDIEMKVGAVNEHNQIHINLNMKPRNMYTCIDCGEKFKSCTALANHIKLVHRLKQLPPQQFASADLADFCEVVVTKAEPLDEIQSHNGFGEVPEKQEGSPLVNLSGFNCTICGKTMPTLISLKRHINWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMRVHYRDTNLDPTLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHFKRGESQNTIVGDVLPNTADKSVFDGTHTCQHCGKVCDSESSLKHHMSWHKSKTLLFGARHECPICKVMFTNKKRQELHTRTHYEDENGPFKCTICGKGYIDEDYFKRHVKGHNFDHQSHKKRIEKLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMIKEDPDAPPKTFYSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHNLHIKSHLTSKHIDNPLKCPQCEETFIKGYDLHYHLRDVHNTNETWIAERTEQTLNGPLKEFQCSICLKVLASKGNYERHIDYHNSLRCNYCYDYFSSLRFLEGHLKFSCDKKKLIGDTEIYPRKIKCYVCYKAFHIQVKMDCHLRIRHGIKVSKEASKSKKDLVCDYCFRVFENADALTTHKVYHRTVGYYGCLYCKRKFNTLTVYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWLVMPKESIEETCHICQKTFFNLHRHLDYHEENRCKKCGEYFYSRVDFDNHLCAIESDEEVGTLKQDLRPKYEECRFCFKPITRKSSKRKHDHIHKGSGSISCRFCSHKFKTIDAFNIHAFSHRSRKYKKNPLKCQKCGEKFIKYGPFMKHMKDVHKSVQKMHYRATVRAERCVVCGDDFPNLHNHYRAHLANQCQSCHKFFTSAKVFSLHECEKEDTDPTKVFICEENLHLLINSYVPKDEQDEQKYYSQETEEDYMNNMPEIKDDESQNSMENDQYQLQSPIISDVLSLYQKQEQVDEVAGGGESVNGAVDNNIIDLSDDSSIGVSDAVCPIITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -