Pcas010313.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149051.1:3967647-3969911[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.0001 22.3 0.0 2 34 9 41 8 48 0.92 2 2 7.8 6.4e+03 -2.6 0.1 2 14 304 316 304 320 0.80
Sequence Information
- Coding Sequence
- ATGCCGAAAAAACGACAGTATGATAAAGAAGCTATAGATAATGCTGTTAAATTTGTCCTAGAGGGTGGTGGTTCTATTCGGGGAGCCGCTAAACAATTTGGCGTACCAAGAAGTAGCGTTCAGTTTAAGCTACGTAACCCTACTTCAAAGTTTAAGTCTGGACCTGATCcagttttaaatgaaactgaAGAGAATGAGctgtgtaattttattattcaatcaGCAAAACGTGGGTTTCCTATGAAAAAAGAAGATGTACAAACCTGTGTTAAAGATTTTCTGAAAGCAAATCCGAGACCAAATCCTTTTCGCGATGACAAACCCGGAGAAGTGTGGTTTAAAGCGTTTCTAAAACGTCATCCAAATATATCAATTCGGACCTCGGAAGGAGTGACAAATGCTAGTGCCTGTGTTTCAGAGCAAGATATAAGAAAATGGTTTAATGAAATTGGGCAATATATTGAAGAAGAAAGCTTACAAGAGGTTATGGCAGATCCCCAGAGAGTTTTTAATGCAGATGAAACAGGTTTTAATGTTTGCCCGAAAACTGGGAAAGTTTTAGCAGAAAAAGGCGCCAAAAACGTATATCAAATCGAAAAAGATAATGTTGATTACAGCAAATGTATACCATTGAATTCGACACATGAGACAGGACAAGAACTTATGACCCCTGTACCAACCGCAAGTTCAATTGACAGCATGCCTGTGCTGGCCTACTCAGATTTCTGTACTATTAAATTCCATGGATTTCATGAACAGAACAACAACGATATTGTTGAATCATCTTATGACACAGGCATATATTCTTCTAAACAAGTTACAGCTTCTAACCTTCAGCATGCTGACAGAAATAAGAACACAATTCTCGACGAAAGTACAGGTGAGTTTACACAACAGAATCAGGAGGTCGACGATAATCTGGAAGCAGCTGCGAATGTCGTTATCGAAGATAATGAGCAAATTGAGGATTTACAAATACAGGCTAGTCTATCCACTAACGATGAACATTCATTCGAATCCGAACAGATAGCTCCAAAAcaaaagataaatattatatctaatgtGTCTCTCGCCGATTACTTGAAACAAAAAAGGTTACCAGAACCACCAAAACGCCAAGGACAGCGGCAAGTACAAAAAACACCCTTTGCTCTGACATCAAATAGCTATGTGGAATTAATACAGGCAAAGCAAGTAAAGAAACAAGAGGAAGAGGCTGCAAAAGAAGCAAGAAAGCGATTAAGAGCAGAGAAAAAAGcacaaaaagaaaacattcCAAAGAAAAGACCAACGAAAATTGTAAACGAGAAAGACGTGGCTTCACCTTCAATAACATTACCGCTGCCAACGCTGAATGTAATACCACCGGCTATCAAAGCCAAAAAACTGGTGAAATGTTGTGATTCTTGTCTAAGTCCTATAACAAGAAAGGTTCTTGAATGCAGCCAGTGTACTAAAACCTATCATCAAAATTGTATTCCTGTACGTCATCGAATTCATATTCCTAcagacgacgacgacgacacTTTCTTGTGCCATGGTTGTTACAAAGAAAGCAACACTGACTCTTCGGATGACTGTGATAATGATTTACTTCAGTCACTACATAGAGAAGCTAAAAAACAAGGCTATTAG
- Protein Sequence
- MPKKRQYDKEAIDNAVKFVLEGGGSIRGAAKQFGVPRSSVQFKLRNPTSKFKSGPDPVLNETEENELCNFIIQSAKRGFPMKKEDVQTCVKDFLKANPRPNPFRDDKPGEVWFKAFLKRHPNISIRTSEGVTNASACVSEQDIRKWFNEIGQYIEEESLQEVMADPQRVFNADETGFNVCPKTGKVLAEKGAKNVYQIEKDNVDYSKCIPLNSTHETGQELMTPVPTASSIDSMPVLAYSDFCTIKFHGFHEQNNNDIVESSYDTGIYSSKQVTASNLQHADRNKNTILDESTGEFTQQNQEVDDNLEAAANVVIEDNEQIEDLQIQASLSTNDEHSFESEQIAPKQKINIISNVSLADYLKQKRLPEPPKRQGQRQVQKTPFALTSNSYVELIQAKQVKKQEEEAAKEARKRLRAEKKAQKENIPKKRPTKIVNEKDVASPSITLPLPTLNVIPPAIKAKKLVKCCDSCLSPITRKVLECSQCTKTYHQNCIPVRHRIHIPTDDDDDTFLCHGCYKESNTDSSDDCDNDLLQSLHREAKKQGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -