Pcas014032.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- clz9
- Assembly
- GCA_038024825.1
- Location
- CP149055.1:5823300-5825970[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-08 3.2e-05 23.9 0.0 1 36 8 43 8 50 0.88 2 2 6.2 5.1e+03 -2.3 0.0 13 23 475 484 471 484 0.73
Sequence Information
- Coding Sequence
- ATGGCGCCAAAGAAAAATTACTCCCCGGAACAAATGGGGAGGGCATTGGAAGCTGTAAGGACGGGAGAAAAGTTAAGCACggctgccctccggtttggggtccctcGAATAACCTTGCATAACAAGGTGACAGGCAAAAGTCCTGAAGTTTGTACTATGGGGCCCCAAACTATCCTCACGGCAGAGGAAGAGGACATTCTGGTAAAATGGCTTGCCGCAATGAGCGAAAAGCACTTTcccataaataaacaattcttaacagagagcgtgcaaaagATTATATCAGACCAAGGGAAGGTCAATCCTTTTACAAATAACAAACCTGGAAAAAAGTGGTtttcatcatttttaaaaCGACATCCAGATATAACGGAAAAAACAGCACAAAATCTTTCGACGTCGAGGAATGACGTTACCGAAGAAGACATCCGCAAATGGTTTGGTGAAATAAGGACATACATAGAAGGTAAAGGTTTAAAAGATGTTTTAGATGAACCCAACCGGATATTTAATACCGATGAAAGCGCATTTTTTTTGTCACCAAAAGCAGGCCGAGTTCTTTGTAAAAAAGCAGAAAAACATCTGTACCAATTCTGCGGCGATGAAAAAGACAACCTAACTGTCTTAGTCACTGCCAATGCCACCGGTCAATTAGCACCACCGATGATAGTCTTCAAGTATGAAAGACTGCCAGCGTACATAACAGCCACTGTTCCTGAACATTGGGGAATAGGAAAATCTGAATCTGGGTGGATGTGTGGAAGCACATTCTACGAGTATATCACGAATATTTTCAATCCATGGCTAGAGGAGCAAAATATCCCAAAACCcgttctgttttttttagatgGCCACAGATCACATTTAACATTACATCTATCAGATTTTTGCTCCGCAAACGGTATAGAGCTCATTGCTCTATACCCAAACTCAACCCATATCCTTCAACCAATGGATTTAGCAGTATTTCGGCCTTTGAAAGTAGCCTGGAGAAAGGAAGTTTCTAAGTGGCAACTGAATAACTTGGGTAAAGTCATGAAGAAAGATCACTTTGCACCTGTGCTAAAAGATGCTATTAGCAGAATATCAGAAGAATGCATTCGGAATGGGTTCAGAGCTGGAGGTTTGCACCCTTTCGGACCGGACTACATTGAtatgagtaaaataaaaaaaaaacacacacaaATTATTGAAAAGGAAGTGGACCTAAAGCAAATAGAATTTGTGAAATACCTGGAAGCTGAGATAGTTGCTGTTTATTCGACACAAAAGCTAGACTTGTTCAAAGCATTATATCTCAAAGACAGGAGCACCGTTGAACAGAATATACCAAGTGAAGATGAGTCGCTGTTTGTTATCTGGGCCAAAAACAAACATGAGTCGTTTAATAGTGAAAGTTCTATTTTCCAAATAGAATCAGTAGAGAATCAGCTGTCCACATCAGAAGCTGCTCTAGATGACACAGAAAGTGAAGTGCAACATCCAAATTCGACGCCTTTTTTAACCACGGAGGGTTCTCTGCTGTTGGGATCTCAGAAAACATCATCTCTCAACCCACTGGAATTCACTGAAATTGAACCATGCCGAGATTCTTTAGCTTCACCTACAATAAGTGAATTACCTGACCAAATGGATGAACCGCAACATGAGCAAACAAACCGAATTAATGTCGAAAATCAAGAATTATCCTGTAGTACACCACCTACGCAGACCCAAACATTCCCAATAAATCAAGCATTCGAAAACCAAATACCGGAATTTGTCCCAAGAACCAATAACACGGAAAGCCCATCAGCAACACCAGAAAGTGTGTCATTAACTACTGCCAGAGTCCCTGTACCTGGCGTATCTCCTCAAAAACATCCTTTAGAAGCTGCTTTAGGTGTATTGGTTCCATCACCTTTTAAGAAAAGTCTTTTTTGGCCCGAAGAACCGAAggaaaaaagaaagaaaaaagagAAGTTACCATTTGCAGTGACTAATTCTGATGATGAACCTTTAAGAAGCTTAACAGCAAATACAAACTCTGGCCTGGTAGTTGCTAAAGGACAATATGTTATAGTCAAGTATGAGGGAGAATATTTTCCTGGAAAAACTGAGGATGTCGACCATAACCAGTATGAAGTAAGTACCATGATATTATCAACTGGAAACTCTTTCAGATGGCCTGACAAGCCTGACAAAATCTGGTACAATGCTGGAGATGTTGTGGAAGTTATAAATACCCCGTTGCCTCTTAATAATCGAGGCTTCtacaaaattaaagaaatgGAGAAGTATTTgccaaatatatatacctag
- Protein Sequence
- MAPKKNYSPEQMGRALEAVRTGEKLSTAALRFGVPRITLHNKVTGKSPEVCTMGPQTILTAEEEDILVKWLAAMSEKHFPINKQFLTESVQKIISDQGKVNPFTNNKPGKKWFSSFLKRHPDITEKTAQNLSTSRNDVTEEDIRKWFGEIRTYIEGKGLKDVLDEPNRIFNTDESAFFLSPKAGRVLCKKAEKHLYQFCGDEKDNLTVLVTANATGQLAPPMIVFKYERLPAYITATVPEHWGIGKSESGWMCGSTFYEYITNIFNPWLEEQNIPKPVLFFLDGHRSHLTLHLSDFCSANGIELIALYPNSTHILQPMDLAVFRPLKVAWRKEVSKWQLNNLGKVMKKDHFAPVLKDAISRISEECIRNGFRAGGLHPFGPDYIDMSKIKKKHTQIIEKEVDLKQIEFVKYLEAEIVAVYSTQKLDLFKALYLKDRSTVEQNIPSEDESLFVIWAKNKHESFNSESSIFQIESVENQLSTSEAALDDTESEVQHPNSTPFLTTEGSLLLGSQKTSSLNPLEFTEIEPCRDSLASPTISELPDQMDEPQHEQTNRINVENQELSCSTPPTQTQTFPINQAFENQIPEFVPRTNNTESPSATPESVSLTTARVPVPGVSPQKHPLEAALGVLVPSPFKKSLFWPEEPKEKRKKKEKLPFAVTNSDDEPLRSLTANTNSGLVVAKGQYVIVKYEGEYFPGKTEDVDHNQYEVSTMILSTGNSFRWPDKPDKIWYNAGDVVEVINTPLPLNNRGFYKIKEMEKYLPNIYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245873;
- 90% Identity
- iTF_01245873;
- 80% Identity
- -