Pcas012596.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- Hr39
- Assembly
- GCA_038024825.1
- Location
- CP149053.1:10119793-10126591[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-10 6.3e-07 29.4 0.0 2 40 272 311 271 315 0.88
Sequence Information
- Coding Sequence
- ATGACCCGGTTCGCTATCAAAGTTGTACTTGGCTGCCCAATTTGCGGTGATATCATCAACGGCATTCACTACGGCGTCTACACTTGCGAATCTTGCAAACAGTTCTTCAAAAGAGTGGTTCTGAACAAGAAGACTTCATCATACTGCTGCGTCAGGGGGAAAGGGGATTGCGTTATTACAATATCAAATAGAACCAAGTGCCTATACTGTAGATTTGAGAAGTGCAAGGAGGCGGGGATGCGTAGGGAGCTAGTTCGGTTTACAAAGAAAAGAGGTGGACTTCTACTTTTCAAAACTACGCTTACAGCTGCTGAGAGACAGCGACGATGTCGGGAACggcgtaaaaaaaatccagaAAAAGTAGCAGAATGTAAAAGAAAACAGCTTGAAAGATACCATGCTAAGAAACGCTTAGTAAAAGACCTTACGTTCCGGGAACATTTAGAGAAAAAGAGAAAATGGCGGACAGCTAACGCTAAACGGAGAGAGCGGGGTGTTATTATATCAAAACGCGACTCACACCCGCGGAAAAACAGCGGCGTTACAGGGAACGTCAGAAACTCGATCCAGAAAAAGAAGCAGAGTGTAGGAGGAAACAACGAGAACGATATCACGCCAGGAAACGTTTGTGTGGATGGAAAGTGCATTTGTAAACAAACGCAGAAAAAGGACATACCGCAGGAAACCAGGAGCGCGTCAATACAGGCAATACACGCCAGAGCAACTTCAGCTCGCTGTGAAAATGGTCCCCATATTTTtcgaataaaaatagaaaagaagaGCAGCCGTAAAAGTAAATACCGGAACTACCCGCCGGAAAAAATGGAACTTGCCGTAAAGATGGTAAAAGAAGGCAAAATTTCGAGCCGGGATGCGGAGAAGAAGTACGGAGTTCCAAGAACGACAATCAACGACAAATTGCGCAATGGAAATAATGCAACTGGCTGTAAAACTAGTTACGCGCAGAGAGACTTCTGCCCAGTATGCGGAGACATAGTCTCCGGCCTCCACTATGGTGTCCACACTTGCGAGTCCTGCAAGCTGTTCTTCAAACGATCAGTCCAGCTGGACAAGTTCACTTCCTACGTGTGCAAACACCCTGGACGTTCCTGCGTTGTACGCATGGCTACCAGGAATTGGTGCAGGCTGTGTCGGTTTAAAAAGTGCCGCACGGTTGGCATGCAACCTTTAATGGTTAGGTGTAAACTTGGACGATCGTTGGACGAGCGTATGGTGGAGTTCGATTACGAATAA
- Protein Sequence
- MTRFAIKVVLGCPICGDIINGIHYGVYTCESCKQFFKRVVLNKKTSSYCCVRGKGDCVITISNRTKCLYCRFEKCKEAGMRRELVRFTKKRGGLLLFKTTLTAAERQRRCRERRKKNPEKVAECKRKQLERYHAKKRLVKDLTFREHLEKKRKWRTANAKRRERGVIISKRDSHPRKNSGVTGNVRNSIQKKKQSVGGNNENDITPGNVCVDGKCICKQTQKKDIPQETRSASIQAIHARATSARCENGPHIFRIKIEKKSSRKSKYRNYPPEKMELAVKMVKEGKISSRDAEKKYGVPRTTINDKLRNGNNATGCKTSYAQRDFCPVCGDIVSGLHYGVHTCESCKLFFKRSVQLDKFTSYVCKHPGRSCVVRMATRNWCRLCRFKKCRTVGMQPLMVRCKLGRSLDERMVEFDYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -