Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149054.1:4501085-4503377[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.6e-10 2.9e-07 30.5 0.1 3 39 65 101 63 106 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.6e-10	2.9e-07	30.5	0.1	3	39	65	101	63	106	0.92

Sequence Information

Coding Sequence: ATGACCTTGAATGGCTCCCGCTGCCAAAGTATTAACACCGAGCGACGAACTTGTCAGAACCTGCAGTCACATTCGTGTTGCGCTGTCGACCGCACGTGGCGTTTTGTAATATCAGGCCTCCTAAAAACtGACCTAATGGAAAATAACGTACGTCCCGGCCCTCCAAAACCGAAAAGGGCAGCTTGGACAGCAACACAACTAGAAAATGCTGTTTTAGCAGTACAaaggaaaattctttcacaaagAGAAGCCGCGGAACGTTACAAGGTACCTAGACGTACTTTACGTAATCATTTGAAAACTGGGTCAGTAGAAAGGAAACTTGGACGTACAGCAACACTTACCGTTGAACAAGAGGAAGATCTAGTCGGCAGAATCCTTCGCCTAGCAGCGGTAGGAATGCCAATGACCCCGAAGATGGTGCGAAGACAAGCATATGAATTTTGCAGGCTTAATGGCATTCCTAATAACTTTAACGACACCAAAAGCTTAGCAGGTAAAAAATGGTTCACATTATTTATGAAACGACATCCCAATGTATCCACACGCAAGGCGCAGATGATGAATCCTGCTAGAgcacaaaaattaaataaattcattgtGAATGATCATTTCGAGAAGGTAAGGAATCTACGCGAGAGTTTAATGATTGAAAACCGACCAGAATGCTTATACAATATGGACGAAAAGGGCTGCCGCATTTCTCTGCACCATCAACAAACTGTGTTAGCTGAAAAGGGAGCAAAAAGAGTTCATCAGATAACAAATGAGCATGCAGAGAGCGTCACCGTTGTTGGTTGCGTAAATGCCGTAGGAAATGCTATTCCGCCTATGATTTTATTCAAAGGGAAGAGGTTAAAGCCAGAGTTCACCGACAATCTACCTGCAGGGGCGCTGGTAAAAATGACAGAAAAAGGTTACATGAACCACGAAACCTTTGTTGAATTTATTCGTCATTTAGCTAAGTACAAAACATCAGGAAAATGCCTACTAATTTTCGATGGAGCAGCCTCCCATCTGGATTTCAGTATTGTTGATGAAGCCGAAAAACACGACATCACACTATACTGTTTACCATCAAATACGACACATGAACTTCAACCCCTGGACAAGTCGGTGTACCGTTCCTTTGAGCACCATTGGGACCAGgaattgttgcgttttgtttcCATGAATCCAGAGAGGAAATTGAATAAGACAAGCTTTAACATGATTTTATCTCATGTCTGGCCAAAGTGCATGACTCATGACAATATTGTGAATGGGTTTAGGGCTACTGGCCTATACCCATTTGACCCAGCTGCGATACCTGAAACTGCATTTGCTCCTTCAGTGTTATCGGAATACAATGATAATACGATCAATGTTGATAGCAGGGCATCTACGAGCAATTCAGTTCCAGAGCAAAATCAGCAAAGACCGAATGCTATTTCTTCCTCGTCATCAGAAGTTGATTCAGCAACCCGTGCACTCAACACTGCATCTACAAGCCATTCAAATCCTCAACCAAGTCAACATGGTCCAGTAAATTTTGACTCAGACAGTGACACGAGTTCAGACGATGTTCCGCTATCTTTAATAAGAACAAGGGCTGGAAAACCCGCACCAACACAATCTTCTCCAGACTCAGAATCCAGAAATGCAGAAGTGGTATTTGAAACCAACCAACCCGCTAATACACCGATTAAGTCACCCTTTCAAACCCTAATCCCGACTCcgaaaaattctaaaataaacataaatgcTCCACGCAGGAAGGCCCTTAATTACAAAGGTCAGGAAGTAACCAAGGATCTATTTCAGTCCAGAGAAAAAAACACTACAGTGGGCACCAGAGGTCGTGGACGAACTAAAACAACTACCAATGACAAGAGAAGTCAAAACTCTAAGGTGCAACGCAAAAAACAGCCAGATGCTGCTGGCTGGTTTTGTCACGCCTGTAGAGAAGACAAAGTAATGGATATGAGGCAGTGCAAGAAATGTGGTACTTGGTACCATGAAGATTGCGTAGGTCTAACGGCAGAAGACGAGGACTTTGAATGTCCTGAGGTGTGCCCCGAGTAA
Protein Sequence: MTLNGSRCQSINTERRTCQNLQSHSCCAVDRTWRFVISGLLKTDLMENNVRPGPPKPKRAAWTATQLENAVLAVQRKILSQREAAERYKVPRRTLRNHLKTGSVERKLGRTATLTVEQEEDLVGRILRLAAVGMPMTPKMVRRQAYEFCRLNGIPNNFNDTKSLAGKKWFTLFMKRHPNVSTRKAQMMNPARAQKLNKFIVNDHFEKVRNLRESLMIENRPECLYNMDEKGCRISLHHQQTVLAEKGAKRVHQITNEHAESVTVVGCVNAVGNAIPPMILFKGKRLKPEFTDNLPAGALVKMTEKGYMNHETFVEFIRHLAKYKTSGKCLLIFDGAASHLDFSIVDEAEKHDITLYCLPSNTTHELQPLDKSVYRSFEHHWDQELLRFVSMNPERKLNKTSFNMILSHVWPKCMTHDNIVNGFRATGLYPFDPAAIPETAFAPSVLSEYNDNTINVDSRASTSNSVPEQNQQRPNAISSSSSEVDSATRALNTASTSHSNPQPSQHGPVNFDSDSDTSSDDVPLSLIRTRAGKPAPTQSSPDSESRNAEVVFETNQPANTPIKSPFQTLIPTPKNSKININAPRRKALNYKGQEVTKDLFQSREKNTTVGTRGRGRTKTTTNDKRSQNSKVQRKKQPDAAGWFCHACREDKVMDMRQCKKCGTWYHEDCVGLTAEDEDFECPEVCPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -