Pcas000417.2
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149044.1:5913065-5915865[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-11 2.7e-08 33.8 0.0 4 39 175 211 172 215 0.89 2 4 5.8e-12 4.7e-09 36.2 0.2 2 39 227 264 226 267 0.92 3 4 2.5e-14 2e-11 43.8 0.0 2 45 282 326 281 326 0.96 4 4 6e-18 5e-15 55.3 0.1 1 44 333 377 333 378 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGACACGGGCTGTCGCAAGTCAAGTGCGAACCGACATCTGAAGAAGACGACAGCAATTCTCAGTTCGCACACAGTTTCCTTTCTAACCAGATCCCGTCACTTGATATTCGTCCAGTAAAATTAGAGCTCGATATAGACGGCAGTGACTCGACACATATCCTTCATCATTTGCAGggtTCGGATGGCCTTGAGGAGTTGGCACCGTTGGCGCCGGCGGGTCCGGCGGCGACACCCGTGTGCGTGAAACAGGAATCTACAGAGAGCTCCGCCGTCACGCTGGAGACCCTAGAATCCGCACCTCATACCGACACCCTGGGTTCAACATTAATTGATAGACACAAAACACTGCCGGGCGCAATTGACACTGACTCTACTGATTTCCTGCCTTTGTTGTCTGTAAAAGATGAACCACTATCCGAAGGAGAGCAACACCTGTACAGCGGTTCTGACTGCAGCGACTCAAGCACGCAGCCCGAGCCGGCTGCTCGCGCCAGTCCGAAGAGTTGGACGCAGCAAGACATGGAACTCGCATTGGAGGCACTTAGGAAACACAATATGAGTCTTACGAAGGCGTCAGCTACATATGGCATCCCATCCACTACTCTCTGGCAACGTGCACATCGGCTCGGCATCGATACTCCAAAAAAAGAAGGAGCTTCTAAATCCTGGAGCGAGGCGGACTTGAGAGGAGCCTTACACGCGCTCCGCTCAGGGGCGATTTCAGCAAATAAGGCCAGTAAAGCGTATGGGATTCCAAGCAGTACCCTGTACAAGATCGCTCGACGCGAGGGCATTAGATTAGCAGCTCCATTCAACGCGGCACCCACAGCCTGGCGCCGCGCGGACTTAGAGCGAGCACTGGCTTCAATAAGATGTGGCGCTTCTTCCGTTCAGAGAGCGGCAAGCCAGTTTGGTATTCCTACTGGAACTTTGTACGGGCGCTGTAAGCGGGAAGGTATAGAATTGTCCCGATCGAACCCTACTCCATGGTCTGAAGATGCGATGGGAGAGGCTCTAGAGGCTGTCAGGATTGGTCAGATGTCTATAAATCAAGCAGCCATCCACTACAACTTGCCATATTCTTCGCTCTATGGCCGGTTCAAAAGGTGTAAATATCAGACACAGAGTCCTCCAGCTGTACCTCAACACACTATGCAAGAAAATGTTGAAGTTGATCCACAAGCTCAATCGCATGAAATGGTATACTACCAGCATCAAACAGCTTCAATATCGCACGGGATGCATCCGGAACTACAAAACCCTTATATACACCAAAATTACATGATGGCGGATCCAGGCCTCGATCCTTCCATGAATGGGAATGTGCAGAATCAGAATTACAGTGGGCACGCTATGTATTACATGCAAGGTTGTAGTAGCATAGCGACTAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPTSEEDDSNSQFAHSFLSNQIPSLDIRPVKLELDIDGSDSTHILHHLQGSDGLEELAPLAPAGPAATPVCVKQESTESSAVTLETLESAPHTDTLGSTLIDRHKTLPGAIDTDSTDFLPLLSVKDEPLSEGEQHLYSGSDCSDSSTQPEPAARASPKSWTQQDMELALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQSPPAVPQHTMQENVEVDPQAQSHEMVYYQHQTASISHGMHPELQNPYIHQNYMMADPGLDPSMNGNVQNQNYSGHAMYYMQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -