Pcas021198.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149065.1:2733886-2747274[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.7e-10 4.4e-07 30.6 0.0 3 87 248 319 246 321 0.84
2 2 0.16 4.3e+02 1.8 0.0 2 25 313 336 312 350 0.82

Sequence Information

Coding Sequence
atgaaaatacgcgagttaaattcgGATGAAGTCCTAGCCATCAACGACAAGGTGGTCATAAGAGCTGAAGACCTCCTGTCCTGGGTGTGTCTGGGCGGCGACTGGCGCTGGGGGCTCCGGGCGGTGTGGCGCGGCGCGTGCGCACCTCCCGCGGACCCTCGGACCACGCAGGCGCTGCACCACACCAGGCTCGACTTCAGCGACGTGGAGCGAGAGAAGAGCGCCATCTCCGAAGACTCCGACATCCCAGGCGTGGTGGTGTTCTCTTACCCCCGGTACTGCCGGTACCGCGCGCTGCTGTCCCGGCTGGAGGGCATCCAGGGGGACTGGCTGCGGGACTCGCTGGTCGCCGCGCTCGGGGGGTACGCGGCGCCGAGCAAGAACACCAGGATCCTGTACTGCAAGGACACATTCGAGTACCCCGAGCTGGAGGGGCACGAGTTCGTCTGCAACCAGCTCGCGCCGAAGCTGAAGGGGCGGCCGCGcgggcggcgccggcggcgcgcgcgctcgCACTCGCCCTCGCCCTCCTGCAGCAGCGACAGCCAGCCGGAGGAGCCGACGCCGCCGCTGtattacgtaagagCGTGGGGGGCGGGGGTCTCTAGTGTAACGTCGCCCTGCAATGACAGTCAGCCGGAGGAGCCGACGCTGCCGCTGACCCCGCGGCGCCTCTCCCTCCGCAACGGCCCCTCGAAGCACAGCGACGACGAGGACAAGCCCGAGGAGAGCGCCGAGGACCGCGCGTTCATGAGCCACCTGAGGCGGTTCTACAGGGAGCGCAAGGAGCCGTTCAAGCTGGCGCACTCGCTGAAGGACTTGTCGTTGCGAGCGTTGTACTGCGGCGTAGCAGAGGCGGGCGGTTACGAGGCTGTCTGCCGACTGAAGTTGTGGCGGCGGCTGCACTCCGCGCAACCGAACACCGCCAGGCGGCTATACGAGAGGTTCCTGCTGTCATTGGAGAAGCACGAGCAGCGGAACGGGGTGAAGTTTCAGAAGGTACCCAACGGCAAGGTCGATGAACCGCGCACCATAGACACCATAGAGGTAGCTGATTCTCCTCTCCGAGACACACACGaaaaactACCGGAAATAGAAGAGAAGCGACTACGCACGCCGTCGCCCAAATTAGAAAGAAAGGACAACGAGACGGGCGAAGTCATAaagGAGGAATTGAACATTATAAACAAACCAGCTGAAGAGTTGAACAGAGAGTTCCTCGACTCCCTCCCCAAAGAGGAGAAGGGGAAGATCAGCGTGAAGCCGGTGGAGAAGCTGATTGAGCCGAAAGAGGAGAAGGAGAAGGAGGGGGTGTACCTCAACGAGCTGGCGCACAAGTTTAGTTTAGgcAATGCTGATAAGAACTTACTAAACGACATAGCGACAGCTCAACAGGAGTTGGTATCAAGCAACGCTCTCAGCTCACTCTGCTCGCTGGTCAACGGACACAGAGACCAGAGTCGTCCCGCCGGCCGCAGCTCGCTCCGCGCCGTGCgagtgaagccggggcgcgcGCCGCAAGCGACAGCCGCGAGGACACCACCGATCCCCCCCCTCCGGCCGGACTCGGCGTCCTCATCGCCGCCCACCATTCCCACCATCACCAACTTCGGCATCCATCACCCGCCGCGGGTGACCTCCTCGAACAGCCAGAGCGATGATGAGATCGTCGAGGTCCCCTACAAACCAAAAACGCCAGAGATTATAGACTTAGACGAATACCCGGAGAGCCCGCAATCGGTGAAGAAGAAAAAGCTGGACATATTGAAAGAGAGAGGGTTAGAAGTCACCGCTATCCCCTCCACAGTTCCCCCCACCGCCCTCCCTACTTTACCCCCCTGGCCGACCCCCGCCCCTATGCTCCTGAATCCAGTGCAGCATCAGATCATGACCCAAGCCCAGCTATTCCAAATGTACAATATGATACCGACTTACTCCAACGGCCTCCAACCACCCAAGGTCATTCAGGCTACCAGCGCCTTCGGTTCCTCAGGACCAGAGAAGACGGTCTACGGGAACCCTAAAGATCCCTTCATGCCTCCACCGCACGTGTTGCACGGCACCCCAGTCAAACCGCAGAAGGTTCAGACTTCCACAACCCCTCCTCAGGATATTCTAGACCTCACTTGTAAAAGTCTGACGCCACCGAGTCAGAAACCAGCtgttgagatcgtcagaataCCTAACGTTGCTTCTCCATCGAAGAATTCCGCGCAGAATTTATCGAAAAATTACACCTTGGTCGACGGGAAGGCTGTAGTAGGTTCCAATTTGGAGATAACTCTGGTTAACCCAAAGAAGTCTAAGAGTCCCCAAAAGAGGTCCTCCAATGGTAAATTCGTTTCCGCCAAAACTCCACCTAAAGAGATGGCCAAATTCACGCCATCTCCTTCTGGTCTCCAAAAGAAAGCGCCTATAGTCGTTCCTAACTACCAGATTTCTCGAGACGATATTTCGCCGACCAGTTCCACTGGATCCAGGGATTCTCAGTCGAACCTTCTCCAGGCCTTCAAGGGGAACTCTAGCTTAGCACAAATAATGGAGATGCAGAAGTCTGTCTCTTCTGTACCCATAATGGACCCCATGTATATGTCAGCTTTATACGGAAGCCTAGCTGGCAGTATGGATCAGAGACAGCTGGCCCTCTACAGGGACTTTGTGGCCAACCAGTTCCGAGGCTACTCTGGATTGTTGAACATCGGCGCGCCGCCGACAACAAAGAATTGA
Protein Sequence
MKIRELNSDEVLAINDKVVIRAEDLLSWVCLGGDWRWGLRAVWRGACAPPADPRTTQALHHTRLDFSDVEREKSAISEDSDIPGVVVFSYPRYCRYRALLSRLEGIQGDWLRDSLVAALGGYAAPSKNTRILYCKDTFEYPELEGHEFVCNQLAPKLKGRPRGRRRRRARSHSPSPSCSSDSQPEEPTPPLYYVRAWGAGVSSVTSPCNDSQPEEPTLPLTPRRLSLRNGPSKHSDDEDKPEESAEDRAFMSHLRRFYRERKEPFKLAHSLKDLSLRALYCGVAEAGGYEAVCRLKLWRRLHSAQPNTARRLYERFLLSLEKHEQRNGVKFQKVPNGKVDEPRTIDTIEVADSPLRDTHEKLPEIEEKRLRTPSPKLERKDNETGEVIKEELNIINKPAEELNREFLDSLPKEEKGKISVKPVEKLIEPKEEKEKEGVYLNELAHKFSLGNADKNLLNDIATAQQELVSSNALSSLCSLVNGHRDQSRPAGRSSLRAVRVKPGRAPQATAARTPPIPPLRPDSASSSPPTIPTITNFGIHHPPRVTSSNSQSDDEIVEVPYKPKTPEIIDLDEYPESPQSVKKKKLDILKERGLEVTAIPSTVPPTALPTLPPWPTPAPMLLNPVQHQIMTQAQLFQMYNMIPTYSNGLQPPKVIQATSAFGSSGPEKTVYGNPKDPFMPPPHVLHGTPVKPQKVQTSTTPPQDILDLTCKSLTPPSQKPAVEIVRIPNVASPSKNSAQNLSKNYTLVDGKAVVGSNLEITLVNPKKSKSPQKRSSNGKFVSAKTPPKEMAKFTPSPSGLQKKAPIVVPNYQISRDDISPTSSTGSRDSQSNLLQAFKGNSSLAQIMEMQKSVSSVPIMDPMYMSALYGSLAGSMDQRQLALYRDFVANQFRGYSGLLNIGAPPTTKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-