Pmex029958.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- -
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000018.1:4238530-4241925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.019 3.3 9.7 4.1 1 23 38 61 38 61 0.93 2 15 1.2 2e+02 4.0 0.6 5 23 68 87 67 87 0.94 3 15 0.0089 1.6 10.7 1.3 2 23 93 114 92 114 0.97 4 15 6e-06 0.0011 20.7 1.6 1 22 266 287 266 287 0.97 5 15 1.3e-05 0.0023 19.6 0.0 2 23 294 316 293 316 0.92 6 15 2 3.4e+02 3.3 4.1 1 23 326 349 326 349 0.93 7 15 0.068 12 7.9 0.4 2 21 374 393 373 394 0.92 8 15 1.5 2.7e+02 3.6 1.4 1 23 401 424 401 424 0.92 9 15 0.19 33 6.5 6.8 1 23 435 458 435 458 0.92 10 15 0.12 20 7.2 0.6 1 20 505 524 505 525 0.94 11 15 0.083 14 7.6 5.2 1 23 533 556 533 556 0.96 12 15 3.9 6.8e+02 2.4 3.6 1 23 565 588 565 588 0.84 13 15 0.033 5.8 8.9 1.3 1 23 633 656 633 656 0.96 14 15 0.025 4.3 9.3 0.4 1 23 936 959 936 959 0.97 15 15 0.16 27 6.8 1.6 2 23 983 1004 982 1004 0.96
Sequence Information
- Coding Sequence
- ATGGTGCTAAAAAAGTTAGAAGTTTCTCTGGAACGTTTAACAACTGTTTCAGCTGTAGATATCATAAAAATGAAAACAGTATTGGACACCGAGAAATGCAATGATGGTTCCTTCTTGTGTAAAGTTTGTAAGAAGAGTTTCTCTTCAAAATTGGACAAGCATATGCACATTAAGTCATCTCATATAGCGTATATGTCAAGTATATGCGACGCACGATATAAGCTGAAACATAAATTACTTCAACATTACTTGAGTGAACATCTATCTAAACAAAATCAATGTTGTGTTTGTTATACTGTATTATCTACTTATGTAGAGTTGAAACGACACTTAAATGTTCACTGTTTGAAGTATGTTCAGAAAGAAAATGATCATTGTCCAATAGATATTGAGGGGGAGATGACCACGGATCAAAAAGATTCTATGAAAAGGATAGATGAGTTCCCGAAAATTATTCTTAAGGTGCAGCGCAGCAATAATGCCAATGGACTTACGGTCATATGTGATGAAAAGACTCATCCTGATGATGAATGCTTAAATAAGAGTTCTGCAGAAATGACAAATGAACATCGTATATCGCCAATTAGTGAAGAGGATCCAAAAGTTATTAAGGAGccaaaaattaatgaaaatgaaCAAAACTCTTCTGTTAATAATAACTTAGTTACAAAAGGAATCGGAATTATCAATGAATCACAAAATTCTGAAAAGCTTTTGGAAAATAGTAATTCTACGATTAGTAACCAAGATATTGCAAATGTGCAATTGGATGTTATTAAAccaagaattaatatttatccctGTGATATATGTGGAAAACAATTCCACAGCCATAAAAATTTGCAGCAACACATACgtacttttaattatactaCTGATGTCTGTCCGATATGTGGCACTGCATTTAGTTCGAAACGTCTTCTACAGACGCATATTACTGCGGCACATGTACCGCAGATCTCAAAAACCTACAGCTTCCATTGCGTTTTTTGTAATCAaggtttttttaaaaaatatgaacttCGGCCTCATATATTACATCTGCACGGCCAACAAATACTTGACACACTCACGCACGATTCTCGCACGAATGAAGAGATATCAGATACTCAAACCACAACGTGTAATGTATGTGATTTGGTATTTGAGACGCATGACCGTTATATGGAACACAGGATGTACTATTACAAGAATCATACATTTATGTGTTCGCTCTGTGCAGAAATGTTTCAAGGAATGTATATGTTGAATCATCATAACAAACTTACACATTATTCAGAAGATAAGCGTAAatcttacaattatatttgcaacataTGTAATGAGGGATTTAATCACGAGAAGCATTTTCATTCGCATAATATGCATGTCCATTCGAATGAAGAGAATTTGACTGAGGTTGTAAAAGAATCTGAAGAAAGAAGTCAATTTGATCACGCATCCGAGGTCCAAGAACATATTAGAAATTGCTCTACAAATCAACAAAAGGAAATTGGACAATCCCCCAATGAATACACTTGCCACATATGtcaattaaaatgtatagataCTGATGATATGGCAAACCACACAGCCTTTTACTCTAATGATGGCGATTTTAGATGCGATAGATGCAAGAGGCAATGTAGAACACTTGATCTGCTTTACCAACATAGAAAATTAACTCATATTTGTCGTGATACTTATAATGGATATGCATGTCACATTTGTGGCGAAGTTCTGGAAACGATTATTTCATTGAAATGTCACAAGAAACACTTTCATTCAAATGATATTGTGTATGATGACGCATATAATCGTAAAGATTGTGAACAGACGTTATCTCTGAATACTGcaagtaaaaaaatagaacATCAATTTATATCTAACAATACACATAACACAGCAAAATGTAGATATAAGTGCTTGTTCTGCGACATGAAGTTTTTCTCTGCTAATACTATCCAGACACATATTCTTCAAACCCATTTTGATGATTTGACTGCTAAACGCATTGCCCTAAAATctccatttttcattattgaaGGCGACAATATTCGAAAACTGAATTCTATTCAGCAATTGATTGAAGCTAATCAAGTATCAACATCAGCAGTAACATTATCATCAACATTAGCATCAACAGCAACAACTAGAACATTAACGCCAGCAACAGCAATTACAACATCAGCTACAACAATCACAGCATCAGCATCACCAGCGGCAACTACAAAATCAATCTCAGCAGCAATAACTACAATATCAACATCAGCAACAACGGTAGCAACAACATTAGAAGATAACTCGACGCAATTTCTTCAAGATAAAATCCcgaatattttagataaaaaggagataaaagataaaactaATATTGAACTACCAAATCAAATGAAAGCTATACttttggaaaataataaaatcatgcAGAAAATTTCTGCGATGCCATCTATGAGTAGATTTAAGACTAACATTGCAGCATCTATGGCTATTgcattaaataatcaatttaatgCTAATGATTCTAAAGTTAAAGTTTTAGTTCCCTTATCCACTGAATCAACTAATGATCCTCAAAAAGATTAtacaaattctttaaaatctGCATCGATTAATGAAGTTAACAACTTAATATTGTCATCCAATAAATCTACTGATACCAACTTAATATTGTCATCCAAAAAATCTACTGATAAATTTAAAGACTCTGTGGTCCAACCAACTGCATCATTCAAAACTGTAGTTATTGTTCAACAAGCTTGGAAAAGCAATGAAACTACAAATCAGAAGTCTGAACCAATCCGCAGTTACAATTGTAGTTCTAATTACACATGTCCTTTATGTCCATTAGAGTATCCATCTTTGATGTTCTTTCACGCCCATCTGAGATATGCTCATGCGGAATCCATTCAAACTGATACGATTAATTCACAATTAAATCGATCAACTCAGGAGAACTTGttgataaaatgtttattatgcTTATGTGTGTTTATTGACGAGGACAAGTATAAAAGTCATTTGAAGAACCATGctgattatgtatatatatcgaactCTAAGAATGTGGAAAAGACGgacgagaagaaaaagagcACAACTCCTGAAATTATTACTGTAGATGATAATGACAATGTCGAGAATAGTTCAAATCAACGTACAGTCGAAGCTACAGACATACTCGCTCACGAAAAACAGAATGAGAAAATTGGTAAATTGAGAGTAAAGCCTTTCGCGAAGATTATGGAAAATTTATCTATGGAATATGCGTTGAAACATCTACAGTCTACGCAAGTCTCTGATTCTTCATAA
- Protein Sequence
- MVLKKLEVSLERLTTVSAVDIIKMKTVLDTEKCNDGSFLCKVCKKSFSSKLDKHMHIKSSHIAYMSSICDARYKLKHKLLQHYLSEHLSKQNQCCVCYTVLSTYVELKRHLNVHCLKYVQKENDHCPIDIEGEMTTDQKDSMKRIDEFPKIILKVQRSNNANGLTVICDEKTHPDDECLNKSSAEMTNEHRISPISEEDPKVIKEPKINENEQNSSVNNNLVTKGIGIINESQNSEKLLENSNSTISNQDIANVQLDVIKPRINIYPCDICGKQFHSHKNLQQHIRTFNYTTDVCPICGTAFSSKRLLQTHITAAHVPQISKTYSFHCVFCNQGFFKKYELRPHILHLHGQQILDTLTHDSRTNEEISDTQTTTCNVCDLVFETHDRYMEHRMYYYKNHTFMCSLCAEMFQGMYMLNHHNKLTHYSEDKRKSYNYICNICNEGFNHEKHFHSHNMHVHSNEENLTEVVKESEERSQFDHASEVQEHIRNCSTNQQKEIGQSPNEYTCHICQLKCIDTDDMANHTAFYSNDGDFRCDRCKRQCRTLDLLYQHRKLTHICRDTYNGYACHICGEVLETIISLKCHKKHFHSNDIVYDDAYNRKDCEQTLSLNTASKKIEHQFISNNTHNTAKCRYKCLFCDMKFFSANTIQTHILQTHFDDLTAKRIALKSPFFIIEGDNIRKLNSIQQLIEANQVSTSAVTLSSTLASTATTRTLTPATAITTSATTITASASPAATTKSISAAITTISTSATTVATTLEDNSTQFLQDKIPNILDKKEIKDKTNIELPNQMKAILLENNKIMQKISAMPSMSRFKTNIAASMAIALNNQFNANDSKVKVLVPLSTESTNDPQKDYTNSLKSASINEVNNLILSSNKSTDTNLILSSKKSTDKFKDSVVQPTASFKTVVIVQQAWKSNETTNQKSEPIRSYNCSSNYTCPLCPLEYPSLMFFHAHLRYAHAESIQTDTINSQLNRSTQENLLIKCLLCLCVFIDEDKYKSHLKNHADYVYISNSKNVEKTDEKKKSTTPEIITVDDNDNVENSSNQRTVEATDILAHEKQNEKIGKLRVKPFAKIMENLSMEYALKHLQSTQVSDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -