Pmex030508.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polyergus mexicanus
Gene Symbol
-
Assembly
GCA_030449975.1
Location
JAUDSZ010000019.1:1557603-1560532[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0023 0.39 12.6 4.3 3 23 307 331 305 331 0.87
2 11 0.00032 0.056 15.2 0.5 1 23 343 366 343 366 0.95
3 11 0.0011 0.19 13.6 2.7 1 23 407 429 407 429 0.98
4 11 7e-07 0.00012 23.6 1.5 2 23 484 505 483 505 0.97
5 11 8.2e-05 0.014 17.1 1.1 1 23 510 533 510 533 0.95
6 11 0.00013 0.022 16.5 0.2 1 23 571 593 571 593 0.97
7 11 1.2e-06 0.00021 22.8 1.7 1 23 603 625 603 625 0.96
8 11 5.8e-06 0.001 20.7 1.8 1 23 631 653 631 653 0.99
9 11 1.4e-05 0.0024 19.5 0.2 1 23 659 681 659 681 0.98
10 11 0.00022 0.039 15.7 3.4 1 23 687 709 687 709 0.98
11 11 0.00033 0.058 15.2 0.4 1 21 715 735 715 736 0.95

Sequence Information

Coding Sequence
ATGGCAGTTTCGAATGATGACATGATGATGAATAACATGGCTCACGCGGAGCGAATCGTGGGCGACGAGTGCCGTATCTGCCTCAAGTCCTGCATGGACTCGTGTCAGGTGTTCCATAACGGAATACCGGAGAAGATGATGGCAATCGCCGCCGTGCAGGTGGAGGAGGGAGATGGTCTTCCAGCTTCTATTTGTTTATCTTGCAACCGTTTGCTCGATATGTCCTACGACTTTAAATGCCAGATTCAAGATTCCGATGTGAAGCTACGTCAGATCCTGAAGTCACAGGTTCAGTCTATGCTGGACGACAAGCATGCAAAGGATGTTAAAACAATGATGAAACATATAATTACGAATTTATCCAATGTAGACTCCTGTGAAAAAGATAATCGTGTCATGGAACAGAAAATCTATTCACACCATGATATCGTTACATTAGATAATACCACTATTCAATCTGATGAGATAATTAACAATGAATCTTGTATACATAACGAGTTTATACAAAAGACGGAGCAAATTACAGAATCGAATGGAAAAGATGCGCAATACATTGTACTCAAACAGGATATGCATAGCAATGAAATGGTAGAAGTAGCCTTATGTCACGAGACACACATGGATAATATGCTCAACAATCAATCAAATCGATTGTGTAGTTCGACAATGGATGACAGATGCGTCAAGCAGGAACAGTTAATATTACATGAGGATAACGAGACACTGGAAAGTTTAACAGACGAAAATAGAAAAGACACATTAAAGATCGAAGTTAAGAATGATATGTCGTTCAAGGATTTCAATGATCACGATATTTCGAAGCAGACTGCAATATTAGAAACAGACAACCAAGATACGAAAAACGTTATGAACTGCAGTGACGATGAGGAGAAGCCACTGATAAGTAGGACAATCAGATGTCATCACAGATGTATAATTTGCATGAGATCGTTTTCGACGAAAGGGGCGTTACAGCGACATATGATCGTGCACAAACACAAACATAAACATAAGACGAAACTGCGTTATGTGTGTTATGTATGTGATAAGCAATTCTCGAGCATTGCTAAATTGAAGAGTCACGTGCTTAACAATCATACGACGGACGGTAAAACGTCGCAAGAAACTAACGAagataaaaaagttaaaacaTCGGCAAAAGTTACTAGAAGCGGCAACGTGTTGGACGGCATgagagaggagaaaaaaaattttaagtttacATGCAAGGTTTGCTCAAAGCAATTCATATATCAAAAGTCCTTTTTATCTCATGCCAAAAGTCATTCCGAATACCATGAGGAGACTTTGGGTGGCGGAGTTGATCAATACGCGAATAAGACAACGAATgagcagaaagagagaacacCTACGTTCAGAGAAAATGAATCcgaagaggaggaggaagaagaggacGATGACGACAGTGATTTGCCGATTGAAAGTTTACAATGCACGCAGTGCGGTAAACTTTTCGCTACAAAGAGGAATCTGAAAAGGCACATCTCGACGCATAGTGGCTTGAAATTCAATTGCTCGACCTGCGGGAAAGGATTCTCAAGGGTTGACAAGCTGAAGGATCACGAACAATCAAAGCATAAGGAGGAAATATTCGGTAACACTGACGACGAGGATGATGACGATGAAGATAATGAGAACAAAGTCAATGAAAATTCCGAGAGTCGGAAGAAGGACCGACACAACAGGCCGCACAAATGTGCACTCTGTCCGAAAGCTTTCGCGCAAGCTCAATCTCTGGCGAACCATGTGGAGAGGCATAAACGGGTGAAGGACACGCAGAAGCGATTTCTTTGCGAGAAGTGCAGCAAATGCTTTGCCCAGAGCGGTTCACTAGTGGCGCATATGCGGACACACACCGGCATCAAGCCATACGTGTGCAACACATGCAGCCGCGCTTTTACCAAGAGCACATATTTACAACTACATTTGAGAACCCACAGTGGTGAGAAACCGTACATCTGCCAATACTGTAGCAGAGCGTTTGCCCGAGCTAACACCCTGGCGCGACACATCACCATGCACACCGGTGAGGCCAAGTATCATTGCAACGTTTGCGCCAAATCTTTCCGACGATTGACCTCGTTGAATGAGCACACGTACACGCATACCGGTCAGCGACCGTACGTGTGCAAACTTTGTACTAAAAGCTACAACAATGCCGGATCATTGTACGCCCACACGAAGAAGTGCAAAGCACAGCAGTTATCCTCAACGACAGCCACGTTCGCGGTCTCTGCAGCGGATAACACGCCACAACAGAACGACACGTCTATGCCCCAATTACTGATCTACTCTCAGAGAAAATTGGTGGAGGAAGCGACAGTAGGTCAGGTCGTATCCACGCCACAATACATGATGGCGAATGTGCACAATCAAAAAACTGTGCCCGCCAACGTAATTCAACCGTTCTCTGTAGAGGATCCGAATGTATACAATTCGAAACAATTCAAGAACCCGTATTATGCTATTTATCCGAACATGTAA
Protein Sequence
MAVSNDDMMMNNMAHAERIVGDECRICLKSCMDSCQVFHNGIPEKMMAIAAVQVEEGDGLPASICLSCNRLLDMSYDFKCQIQDSDVKLRQILKSQVQSMLDDKHAKDVKTMMKHIITNLSNVDSCEKDNRVMEQKIYSHHDIVTLDNTTIQSDEIINNESCIHNEFIQKTEQITESNGKDAQYIVLKQDMHSNEMVEVALCHETHMDNMLNNQSNRLCSSTMDDRCVKQEQLILHEDNETLESLTDENRKDTLKIEVKNDMSFKDFNDHDISKQTAILETDNQDTKNVMNCSDDEEKPLISRTIRCHHRCIICMRSFSTKGALQRHMIVHKHKHKHKTKLRYVCYVCDKQFSSIAKLKSHVLNNHTTDGKTSQETNEDKKVKTSAKVTRSGNVLDGMREEKKNFKFTCKVCSKQFIYQKSFLSHAKSHSEYHEETLGGGVDQYANKTTNEQKERTPTFRENESEEEEEEEDDDDSDLPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRVDKLKDHEQSKHKEEIFGNTDDEDDDDEDNENKVNENSESRKKDRHNRPHKCALCPKAFAQAQSLANHVERHKRVKDTQKRFLCEKCSKCFAQSGSLVAHMRTHTGIKPYVCNTCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCNVCAKSFRRLTSLNEHTYTHTGQRPYVCKLCTKSYNNAGSLYAHTKKCKAQQLSSTTATFAVSAADNTPQQNDTSMPQLLIYSQRKLVEEATVGQVVSTPQYMMANVHNQKTVPANVIQPFSVEDPNVYNSKQFKNPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00109993;
90% Identity
iTF_00869066;
80% Identity
-