Pmex030541.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- -
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000019.1:1783888-1785699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-05 0.0032 19.1 0.6 1 23 92 114 92 114 0.98 2 13 0.0063 1.1 11.2 3.7 1 23 155 178 155 178 0.97 3 13 1.8e-05 0.0031 19.2 1.0 3 23 190 210 188 210 0.96 4 13 0.0029 0.5 12.2 1.1 1 23 218 241 218 241 0.94 5 13 0.04 7 8.6 6.7 3 23 323 343 322 343 0.97 6 13 0.00062 0.11 14.3 1.4 1 23 352 375 352 375 0.97 7 13 0.097 17 7.4 3.5 1 23 389 412 389 412 0.95 8 13 1.5e-06 0.00025 22.6 1.2 1 23 418 441 418 441 0.96 9 13 0.015 2.6 10.0 0.8 3 23 448 469 446 469 0.94 10 13 0.0033 0.58 12.0 0.5 1 23 474 497 474 497 0.97 11 13 2.1e-08 3.7e-06 28.4 0.4 2 23 504 525 503 525 0.97 12 13 3.9e-07 6.8e-05 24.4 0.7 1 23 531 553 531 553 0.98 13 13 4.5e-07 7.8e-05 24.2 0.1 1 23 559 581 559 581 0.98
Sequence Information
- Coding Sequence
- ATGGACTCAAGCGGTTGCTTCATTGTCGGAAAAGATTCGATACCGATGAAACTGTGGCAGCATGCCGATGCCGGTGGTAAATTGCAGTACTCATTGATACCAGTGTTAGATAACGTTAAAACTGAGGAAGGTGTAAATGTATTTGATGTACCGCCCGATTTGATCTCCATTAAAGTCGAAGAGACCGAAAATCAAGCAAACGATCGAAGAAGTAGCAATGTCGATAGTTGCATGAATTCCTCGATACATTTGCACAAGTTAGCCATTGATGATTATATCTGCAACAAATGCGGTATGAAATTCCCCATACAATCCATGCTGAATCGCCACAAGATAACGCACAATATGCGTTCATTTCGCGAGAGATGCTCGAGAGAGAAACACGCGCAACTAAAGataaattctcgaaaacgatGCAGCGGACAATTAGAGGCGCAAGGAAAACATTCAGAGAAAGCAAAGTACTTTTGCACGTTTTGCAATTTGAGTTGTAATAGACTAGCGACTTTGTACGCGCATATAAAGAGAAAACATGGGGAAGACACGACGAATCCGAAGAAACTCGCTTGTACAATCTGTGATTATGAATGTTCGAGTGAAGCAAATCTAAATAGGCATATGTCTAAGCACAAAAGCAAGAATACGACGAGTTTTGCTTGCAACGTGTGTGACTTTGAATGTAAAAGAAGCACTACTCTAGCGTCTCACTTGGTGCGAATTCATAAGAAATCTAAGAAAAACCCGGGCACATCTCCTGCAAAGAGACGTAGAATAACGAAGTACGCCTCTTCTGATAAATCTCGCTCGCGAAACAGTCGCGAAACAACTAAGAAGGTGTCAATCCCATATGAAGAGTCCAATATGATGATTAAGGAGGAAATTTACATCAATGAAGATTGCAACGAAAAGGGAATTGGCGCTGAAGAAATTCCGAAGAAATCCAGCCAGAAGAATATTGGCGAATGCTGCGATCTCTGCGGTTTTACGTGCGCAAAGAAAAGCACGTTGTACTCGCATAAACGTCGGCACAAGTTGGAGGACGTCGGCGAGGTATACGCGTGCAACGAATGCGGCTTCAAGACCGGTAAGAAATCATCGTTGTACTCTCACATAAAGCGGAAGCACAAGGAGCCGCGAGGCGTCTGTGACGCGCAGCCGGAACTCTTTCATTGCAGCCAATGCGACTATAAGAACAAGAACAAATACGAGCTGAAGATACACGTCGCGCGCAAGCACTCGGACGACTTCAAATTCTCATGCGAGACCTGTGGCAAGAAATTCAAGGTCAAGGGCGATCTGACGAATCACATACGGTTTAGCCATCGGGAACAGCCGGTGATCTGCGACGTTTGCGGCAAGACCTGCCTCAACAGCAACTCCCTATACGTGCACCAGAAGTTTGCGCACTACAAGGCCAAATACGAGTGTCAGCTATGTAAGAGGCGAATGGTCAGTCAAGAAAACCTCGATGAGCACATGCTCAGGCAGCACGAGCGCAGGGAGAATGTGGTATGCGAAGAATGCGGCAAGACATTCTCGCGAAACAGTAGATTGAAGGTGCACATGAGGATCCACACCGGGGACAAACCATATAGCTGCACTATTTGCAACAAGTCCTTTGCTCGCAGGACCGCTCTCAAACAGCATCTGCTCATTCACACGGGTATTAGGCCATACGTGTGCGATATCTGCGGCAAAGCCTTCACACAAAAGCCAGGGCTGATCAGCCACAGGAAATCGCATCCTGGGTCTCATCCGCCACTGCCACGTATCCTCATCGATCACATCTTGAATGATGTCATGAATGCTTGA
- Protein Sequence
- MDSSGCFIVGKDSIPMKLWQHADAGGKLQYSLIPVLDNVKTEEGVNVFDVPPDLISIKVEETENQANDRRSSNVDSCMNSSIHLHKLAIDDYICNKCGMKFPIQSMLNRHKITHNMRSFRERCSREKHAQLKINSRKRCSGQLEAQGKHSEKAKYFCTFCNLSCNRLATLYAHIKRKHGEDTTNPKKLACTICDYECSSEANLNRHMSKHKSKNTTSFACNVCDFECKRSTTLASHLVRIHKKSKKNPGTSPAKRRRITKYASSDKSRSRNSRETTKKVSIPYEESNMMIKEEIYINEDCNEKGIGAEEIPKKSSQKNIGECCDLCGFTCAKKSTLYSHKRRHKLEDVGEVYACNECGFKTGKKSSLYSHIKRKHKEPRGVCDAQPELFHCSQCDYKNKNKYELKIHVARKHSDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQLCKRRMVSQENLDEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYSCTICNKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRILIDHILNDVMNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729517;
- 90% Identity
- iTF_00729517;
- 80% Identity
- -