Pmex028148.2
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- SCRT1
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000017.1:1777749-1780176[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7 6.5e+02 2.4 0.1 3 16 63 76 61 78 0.70 2 13 0.00054 0.095 14.5 0.2 1 23 233 255 233 255 0.94 3 13 1.2e-05 0.0021 19.7 1.2 1 23 263 285 263 285 0.98 4 13 4.9e-07 8.5e-05 24.1 0.2 2 23 293 314 292 314 0.97 5 13 2.3e-06 0.0004 22.0 2.1 1 23 320 342 320 342 0.98 6 13 2e-05 0.0034 19.0 2.3 1 23 349 371 349 371 0.98 7 13 1.6e-05 0.0027 19.3 1.6 1 23 377 399 377 399 0.95 8 13 5.1e-06 0.00089 20.9 0.1 1 23 405 427 405 427 0.98 9 13 5.1e-07 8.9e-05 24.0 1.2 1 23 433 456 433 456 0.96 10 13 4.1e-05 0.0071 18.0 1.3 1 23 462 485 462 485 0.96 11 13 1.4e-05 0.0024 19.5 2.5 1 23 491 513 491 513 0.99 12 13 0.00023 0.04 15.7 0.1 1 21 519 539 519 540 0.92 13 13 0.0059 1 11.2 0.0 3 22 548 567 546 567 0.95
Sequence Information
- Coding Sequence
- ATGACAGCTGATTCTGATAAGGATTGTACACATTGCTTAGTGTGTAATAGTAAAGTTGGAGTATCCACTAGAAATAGTGTTCGCATCTTCAATGATTCTACTACATCGGAGAAGCCACTTGCTGACATTATAGCAACCGTTTTAGAAACAGATGTTAATGAGGAGTCTGTTCATTCCCTTGtcatttgtaaaaaatgttttaaattattcactGAGgtGGATGAACTTGAAACTAGATTAACAGAAATCAAGCTTGAgttatttaacaattataaaagGACAGTAAAGAAATTGCCTAACATATTTCATAATGAAGAAGAATATAATGATCATGATTACATAGACAATACAGAAAGCCAAAATACTGGTGAAACAGAGGATATGCAAATGCTCTCTGATAAGGATTATATACCAGATAATATGccagaagaagaagaatttcTTGTAAATTCAGAAGAAATTTCATTGGAAGTTGAAGAATTAAACGATTCAAATGAACCAGTCacaatacaaaattataaaaagaaattgaaaaagaacaaaattaatataaaagtagaACCTATTCAGGAACAAaTTGTACTTAGAGATGACTCTTCGTACAGTTGTTTATTATGTACTGATGAAAAGGAAAAAGTTATAGCAGATGCTAAAACTATCATAGCACATATGAAAGATGTACATGATACTCGTTTGTATATTTGCGATGTATGTGGGCAGgattttagaaaaagaaatgaacTTTCCTTACATCTAGATGATCATGTTGCAAAGGAAGAAGGAGATTTTCAATGTGAGATATGTAATAGAATATTTAGCAATTTACGATTATTCCGAATTCATAAAAGAATACATTATCCACAAGTAAAGTCTTGGCCCTGTGATATATGTGGAAAGAGATACAGttcaaaaaatttattggaaGAACATATGAATACACACATGGGTGTACGTCCATATATATGCGAAACatgtaataaagattttacatccaagtatacatataaagcGCACATAAAAACACATGAAGTACGACCTCGTCCATTCGAGTGCACTCAATgcaataaaacatttttgaacCAGCAAAATTTGAATCAACATGAACGAACGCATAATGGTATAAAGGAACATGTATGTCATCAATGCGgcAAGGCTTTTGGCTCACCTCACAATTTGGAAGTACACAATATAGTACATACTGGATATAAACCCTACATTTGCAGAATATGTGGCAAAGCGTTTGCACGTAAAGCAGAAATACGTGATCATGAGCGAACCCATACAGGTGAGAAACCATATCAGTGCGAGTTCTGCGGAGCAACATTTAGTCAGAGATCGAATTTACAATCCCATAAGCGAGCAACGCATTATAACGATAAACGTTATAAATGCGACAAATGTCAAAAAGGTTTCAAAAGAAGAAGATTGTTAGATTATCATATAAAAGCAGCCCATACTGGTGAAAGACCGTACAAATGCGATGTATGTACAGCTACGTTCGTCTATCCTGAACATTTCAAGAAACACAGGCGCATACATACGGGCGAGAAACCATATCTTTGCGAAGTCTGTGGTAAAGCTTTTAATAGTAGGGATAACAGAAATGCACATAgattagtactctgcgttgataccactgcttgtTTGGTATGTGGAATGGGATTTATGAGAAAACCATTGCTTTATGCCCATATGCAAACTCAggtaatatatgaaataaaaattaattctgtaagtactctgcgttga
- Protein Sequence
- MTADSDKDCTHCLVCNSKVGVSTRNSVRIFNDSTTSEKPLADIIATVLETDVNEESVHSLVICKKCFKLFTEVDELETRLTEIKLELFNNYKRTVKKLPNIFHNEEEYNDHDYIDNTESQNTGETEDMQMLSDKDYIPDNMPEEEEFLVNSEEISLEVEELNDSNEPVTIQNYKKKLKKNKINIKVEPIQEQIVLRDDSSYSCLLCTDEKEKVIADAKTIIAHMKDVHDTRLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDICGKRYSSKNLLEEHMNTHMGVRPYICETCNKDFTSKYTYKAHIKTHEVRPRPFECTQCNKTFLNQQNLNQHERTHNGIKEHVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDKCQKGFKRRRLLDYHIKAAHTGERPYKCDVCTATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRLVLCVDTTACLVCGMGFMRKPLLYAHMQTQVIYEIKINSVSTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -