Pmex007155.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- -
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000004.1:5730693-5731184[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-14 8.3e-11 42.7 0.1 1 39 15 54 15 57 0.94
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTATAAGAGGAAGACTGAAAGACAGAGCTGGTCCGAGGAGAGCATGGCTGCAGCAATCAAAGATGTTATGGAGGGGAAGATGGGCTACAAAAAAGCTGCTGTTATCCATAAGGTTCCTCAATCTACTCTGGAAGATAAGATAAAGAAAGCTAAAAAGGAAGGTCTGTTTCCTTTAGAAGCTGCCCAAAAAAGATTGGGCCGttataaaactgttttttCAGAGGCTCAAGAAGAAGAACTTGTGAAATACATACTGTTTTTAAAAGAAGGATTATATGGCCTTACTTTAACAGATGTACGCAAACTCGCATTTCAAGTAGCTGAAAAGAACAACATTCCCCATACATTCAACAGGGAAAAGGAAAGAGCAGGAAAAGATTGGCTCTACAGTTTCCTTAGCAGACATAAGGAGTTATCGTTCAAGAAACCAAAAAAAACTTCTTTTACACACACGGAGGACTGTAACCATGCTGCTGTTTAA
- Protein Sequence
- MPRNYKRKTERQSWSEESMAAAIKDVMEGKMGYKKAAVIHKVPQSTLEDKIKKAKKEGLFPLEAAQKRLGRYKTVFSEAQEEELVKYILFLKEGLYGLTLTDVRKLAFQVAEKNNIPHTFNREKERAGKDWLYSFLSRHKELSFKKPKKTSFTHTEDCNHAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00729977;
- 90% Identity
- iTF_00730653;
- 80% Identity
- -