Pmex003434.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- lov
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000002.1:8475504-8479472[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-15 2e-11 44.7 0.0 2 44 536 578 535 579 0.94
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGAACAGTCCCGACAGGATGGGTGTTCAATCACTCTATTCTTTGCGGTGGAACAACCATCAAGCCCACATACAACAGTTCTTCCAAGAGCTGCTGCATGAGGAGAATCTGGTCGACGTGACCCTGATCTGCGCCGAGACCAGCGTCAAGGCACACAAGGTCGTCCTCAGCGCCTGCAGTCCTTTCTTCCAAAGGATATTCGCGGAGAATCCATGCAAACATCCCGTGATCGTTCTGAAGGATTTCTCGAATCATGAACTGTCCACGCTGATCGACTTTATGTATGGCGGCGAGGTGAAGATTGCTCAGGAGGAATTACCAGGTTTAATGAGAGCCGCGGAATGCCTGCAAGTGCGCGGTTTATCGTCGTCGGAACCTAGGCTGGTGTCGGAAGAACCCAGGCCGTCATCATCCTCGTCGACTCTTCTGGAGTTTACTACGCCGGAGGACGCGCGACACGGCACTCCGGAAGAGGATGACAACGCGTCGGAGAACACAAAAGAGATAAAGCCGACGCTGTTTCAACAAACGAGGGACCATCCAACCAAACCGCTCATTGGTCATATGAACTTTGGCATCCGTGAGAGCTGTGCCTCGCCGCTAATGCCGCGTCGAAAACAGGCGCGTCCGCGCCGACGTTCCGGCGAATTGCTGCCGCAGGATTTGAGCAGACGCCCGACTCCGCCGGCCAGTTTGAGTCCATTGCCGAGCGTTCTTAATCTCAGCGGTAATCAGCATCAGacacagcagcagcagcaacagcaggtGCAACTACAACAATCTCAGTATTCTCAACAAATGATCAACAGAAATAATCAACAACAAATGATCAACGCTCAACAGAATCCACAAcatcagcagcagcagcaagaAGATATGGCGGAGAATCTGTCGATGAAGAAGTCTATGTCGCCGAGCGGACTGGAACAGCATCGTGTGAAGACAGAGGGCAGCGAAGCGACGAGTAGTCCGCGCGGTTCGCCGCTTACGGGGACGAGTCTGATGCATCCGGATGGCTCCATACAAGATATACCGGCGGCGGCCGTAGCGGCGGCGGTCGCCACCGTGATACCGTCGATGTCTCTGACGCAAACGCAGCCCTCCGAGTACCTGACAAGCCTCGGCCATCTGGCGAGCCAATGGCTACCCGGGCAAACTTCATTGCCGCCGCCTCCACCGCAGGGCCATCATCCACGCGAAGACAGTCCTCACGGGTCCGGTAGGCCCCATCATGCGTATcagcaacaacagcagcaGGAGCCGTCGATAGTACCGCGACGCAATTCCTTGTCGATGTTTACACCATTGGATGGCGTGACTCTCGGCGGCGGACTTTTTCCTCATACCGGGTATGATAGGACAGTTCTCGCATCAGACTCGTTTCTCGCGGATAGTTTCAATCACGAGACGTTGCAGAACATCTTTAGTGCCCCAAATCTTGGTCCACCTCCCAAGAAAGCGAAAAAACATCGGAGCGATAGCGATGGAACATCGCAACGTAGATGGAGTGATCACAACAGCCGCACGCTCGCGGTAAACAGGCCGAAAGGGCAACATAGTGCGCCGCGAGGAGGACCGCCGAGATCGTGGACGAATAGCGAACTTACTTTAGCTCTGACGCATGTCTGGGAAAAGAAGCTCACCACGTCGCAAGCTAGTCGCATGTTTGGTATTCCTTATAACAGCTTGCTGATGTACGTGCGCGGCAAATATGGAAAGAGTCTCAAGTTGGAGCAATTGCGTAGGAATTGTACCGGCACCAACACTCCCGAGATTATGAACAACAATAACATCAAGCCCGTCCAGCAGTCAGCGCAGATGAGCCACGCGCTCGCCAGTCTATCGTTGCCGCATCCAGGTGACAACAGCGGCTTCGCTTCTCATCGCTCCTTAATTAGCGGCAACATGACGCAGCCGCAAAGTTTCTACGCCCCCGACTATGCTGCCGCGCCCTATCCTCTGGCGGTGAACATGATGCATATGTTACCTCCGAGCGAGCAAAAAACCTTCGAATCGTCCGTGAATTCGAGCGGCGACGGAATTGGATGTCCAGGCGGTGGTGGAGATGGCAACGGTGACGGTGATCTGACAAACTCGCAGACCAGCGAAACACCGTCGCCTATAGTcgatcatcatcatcatcatcatcatcaggagtcgtcgtcgtcgtcgtcgtcgatgCAACCGCAACCAACACAATCAGCGCCTGCGTTGCTACAACAGAACGGTTCGGACTAG
- Protein Sequence
- MSSVGNSPDRMGVQSLYSLRWNNHQAHIQQFFQELLHEENLVDVTLICAETSVKAHKVVLSACSPFFQRIFAENPCKHPVIVLKDFSNHELSTLIDFMYGGEVKIAQEELPGLMRAAECLQVRGLSSSEPRLVSEEPRPSSSSSTLLEFTTPEDARHGTPEEDDNASENTKEIKPTLFQQTRDHPTKPLIGHMNFGIRESCASPLMPRRKQARPRRRSGELLPQDLSRRPTPPASLSPLPSVLNLSGNQHQTQQQQQQQVQLQQSQYSQQMINRNNQQQMINAQQNPQHQQQQQEDMAENLSMKKSMSPSGLEQHRVKTEGSEATSSPRGSPLTGTSLMHPDGSIQDIPAAAVAAAVATVIPSMSLTQTQPSEYLTSLGHLASQWLPGQTSLPPPPPQGHHPREDSPHGSGRPHHAYQQQQQQEPSIVPRRNSLSMFTPLDGVTLGGGLFPHTGYDRTVLASDSFLADSFNHETLQNIFSAPNLGPPPKKAKKHRSDSDGTSQRRWSDHNSRTLAVNRPKGQHSAPRGGPPRSWTNSELTLALTHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRNCTGTNTPEIMNNNNIKPVQQSAQMSHALASLSLPHPGDNSGFASHRSLISGNMTQPQSFYAPDYAAAPYPLAVNMMHMLPPSEQKTFESSVNSSGDGIGCPGGGGDGNGDGDLTNSQTSETPSPIVDHHHHHHHQESSSSSSSMQPQPTQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00868979;
- 90% Identity
- iTF_01245332;
- 80% Identity
- iTF_01245332;