Pmex007851.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- retn
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000004.1:10336434-10342683[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-19 1.3e-15 58.9 0.0 18 89 60 129 53 129 0.94
Sequence Information
- Coding Sequence
- ATGCGCGACTCTAAACCTCAGATTACGCCAACTCGTAAAAGTCCGTTTACGTTTACGTACTTTAAAACGCGCACTATAGTCGCGAGTACTGCTGCTCTTGTTAACACCCCGTTAACTCGTAACTCGGGCAGCCTCGTAAAATTCGACGGTCCGATTACCATGGTAGGAGCTTCTTGGACACCTATTAATCGTCTACCTATCATGGCAAAATCTGTACTGGATCTTTTCGAGCTTTACAAGCTAGTAGTCATGCGAGGTGGCCTTGTCGAGGTCATCAACAAGAAGCTGTGGCAAGAGATCATTAAAGGTCTTCGGTTGCCGGCGAGCATCACTTCCGCGGCATTTACTCTACGCACACAgtatatgaaatatttgtatCCGTACGAACAACAAAAGGAAAATCTCTCGACCCAGGAGCAACTGCAGACGGCGATCGAGACGAATCGTCGCGAGAGCCGCAGAAGCAATTACGCCACTTACGCTACCAACAACGAAAATATGGGAGCGCGAAATCAACATAATGCGCTACCATCGAATGCGTTGGCACTGCCGATGCCACTTAACATGGCCCAAATAGATATCCATGGGTCGCAATCGGCGTTCGTAAACGGACACCCGCAGCATCATTCTCATAACTCGCAGCATGTTCCACCGAACCTAGGACAAGTATCCAATCTTTCAGAATACATGATGAAGATGCTGAGAGATAGAAATACGATTACCAATAATTCGATAATTCCACAACAGACTGGCAATTCGCCACCAACGACGGAAGCACTTAACGCAATTGAATTGTCCAAACTGACTCtatggaatatatataatcaaaataataataaaatttattcagcTCAACAATCCTTCCCTTCGTCAACGTCCCACTCGCCATTAGTGCCGGCAACTAGCCCGGAACCGCAAAGAGAAGCCCTGGACCTTGCAAACTCTGCACATAGATCAGATCCGATATCCTCTCCAAGCGCTAGTAGATCTATTAGTTCACCACCGTCTGGTAACATGAAAAGAGATCAAGATGCTACGGATCTCTCACCTCCAACGTCTAGCAAAAGAATATGTTCCGATGAGGAAAATTTACCCGATAGAGGTAGTAGTATGCGCATTACGCAGATGGTCACCATACGAGaAAGTGGACGAAGAGAACTAGCAATTAGCGTGGACCTCGATGGTATATTATATGAAGGCATTTTACCAGCTAGAAACGACGACGCCAGCAGTACGTCATCGAACTCTAATACAATAAAGCGTTCATGA
- Protein Sequence
- MRDSKPQITPTRKSPFTFTYFKTRTIVASTAALVNTPLTRNSGSLVKFDGPITMVGASWTPINRLPIMAKSVLDLFELYKLVVMRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEQQKENLSTQEQLQTAIETNRRESRRSNYATYATNNENMGARNQHNALPSNALALPMPLNMAQIDIHGSQSAFVNGHPQHHSHNSQHVPPNLGQVSNLSEYMMKMLRDRNTITNNSIIPQQTGNSPPTTEALNAIELSKLTLWNIYNQNNNKIYSAQQSFPSSTSHSPLVPATSPEPQREALDLANSAHRSDPISSPSASRSISSPPSGNMKRDQDATDLSPPTSSKRICSDEENLPDRGSSMRITQMVTIRESGRRELAISVDLDGILYEGILPARNDDASSTSSNSNTIKRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280445;
- 90% Identity
- -
- 80% Identity
- -